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NC_070778.1__YP_010650650.1__PP425_gp110__00110

Bact-Vir

NC_070778.1__YP_010650650.1__PP425_gp110__00110

Identity

Accession:
NC_070778 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kanagawavirus› Enterobacter_phage_vB_EclM_Q7622

TaxID: 2908628

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-69
PDB
Domain cluster: rep: NC_060137.1__YP_010246735.1__L3Y25_gp076__00076__D16-62
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23819.2 best DUF7189 91.9 3.30e-26 100.0% 81.2%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p6rA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 45.0 3.10e-01 91.1% 19.4%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.68 51.0 4.00e-01 80.4% 73.0%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.66 50.0 4.49e-01 94.6% 58.4%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 51.0 3.31e-01 85.7% 59.6%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 49.0 3.89e-01 94.6% 40.5%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.64 48.0 4.46e-01 96.4% 64.8%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.71e-01 73.2% 74.5%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.63 50.0 3.74e-01 89.3% 75.7%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 55.0 4.45e-01 100.0% 74.0%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 52.0 3.37e-01 100.0% 43.0%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 51.0 4.55e-01 100.0% 69.5%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 51.0 4.24e-01 100.0% 80.0%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.57 47.0 3.95e-01 92.9% 64.6%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 47.0 4.31e-01 94.6% 82.9%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.13e-01 100.0% 88.9%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 4.05e-01 91.1% 77.2%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 44.0 3.37e-01 87.5% 87.9%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.55 45.0 3.19e-01 91.1% 29.5%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 3.60e-01 87.5% 49.0%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 45.0 2.85e-01 91.1% 68.8%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 48.0 4.40e-01 100.0% 96.0%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 3.92e-01 100.0% 68.9%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.54 37.0 3.56e-01 83.9% 57.1%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.54 44.0 4.06e-01 98.2% 70.3%
2ya1A03 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.51e-01 80.4% 61.5%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.92e-01 100.0% 66.7%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.42e-01 85.7% 60.2%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 3.27e-01 78.6% 77.2%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.52 39.0 2.87e-01 98.2% 27.7%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.59e-01 100.0% 59.6%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.26e-01 92.9% 44.0%
3spdA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.52 36.0 2.59e-01 78.6% 52.0%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.74e-01 100.0% 57.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.51 39.0 3.92e-01 96.4% 81.7%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 42.0 3.67e-01 91.1% 75.3%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 40.0 3.27e-01 85.7% 50.5%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 33.0 3.19e-01 91.1% 54.3%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.50 43.0 2.54e-01 96.4% 81.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.80 69.0 5.15e-01 100.0% 39.3%
3295376 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.75 43.0 5.32e-01 75.0% 94.3%
3244257 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 55.0 3.47e-01 100.0% 18.5%
3576228 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.65 52.0 4.38e-01 94.6% 53.3%
3989362 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 42.0 4.31e-01 87.5% 69.1%
3249804 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.65 54.0 3.75e-01 100.0% 27.2%
3671794 4286.1.1.1 ↗ beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.64 54.0 4.20e-01 100.0% 44.2%
3588521 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 43.0 4.33e-01 87.5% 69.1%
3243587 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 56.0 3.51e-01 100.0% 33.7%
3475007 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 44.0 3.50e-01 89.3% 37.3%
3250163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.16e-01 100.0% 51.6%
3226237 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 55.0 3.59e-01 100.0% 34.5%
3524157 5.1.4.628 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WDR90_beta-prop_4th 0.62 48.0 2.98e-01 87.5% 26.7%
3791231 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 43.0 3.36e-01 89.3% 34.2%
3267918 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 41.0 4.21e-01 89.3% 70.9%
3228083 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 51.0 3.30e-01 100.0% 20.0%
3716468 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.60 45.0 3.15e-01 80.4% 88.3%
3927945 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.72e-01 100.0% 41.7%
3926600 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 45.0 3.61e-01 80.4% 54.5%
3620293 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.14e-01 87.5% 31.5%
3414153 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.59 45.0 4.45e-01 83.9% 76.7%
3471318 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.28e-01 100.0% 55.0%
3590632 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 39.0 4.01e-01 87.5% 70.9%
3252809 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 44.0 3.35e-01 82.1% 46.9%
3770717 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.58 45.0 2.82e-01 87.5% 42.6%
326556 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.57 43.0 3.36e-01 83.9% 90.2%
3774282 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.62e-01 96.4% 45.3%
4432835 5.1.5.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nup88 0.57 44.0 2.61e-01 87.5% 23.0%
3791186 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 4.01e-01 85.7% 83.7%
1280955 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 38.0 3.75e-01 73.2% 63.9%
3628059 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 45.0 3.45e-01 85.7% 53.6%
3883832 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 45.0 3.25e-01 87.5% 40.6%
4444947 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 47.0 4.05e-01 100.0% 89.5%
4629529 2002.1.1.420 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918 0.56 46.0 2.76e-01 92.9% 22.9%
3269508 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.50e-01 85.7% 52.2%
5001077 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.55 41.0 3.19e-01 80.4% 71.2%
3271442 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 46.0 3.46e-01 96.4% 44.0%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.55 38.0 3.91e-01 94.6% 76.4%
3262550 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.55 46.0 3.65e-01 96.4% 65.0%
3778852 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.55 47.0 3.54e-01 96.4% 47.9%
5072949 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.55 46.0 4.42e-01 96.4% 84.6%
4961538 2002.1.1.256 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C 0.54 45.0 2.71e-01 94.6% 24.4%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.54 38.0 3.90e-01 94.6% 78.2%
3621726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.27e-01 85.7% 49.6%
3273029 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 44.0 2.99e-01 98.2% 29.4%
1177165 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.70e-01 85.7% 66.7%
3503857 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 41.0 3.34e-01 83.9% 56.4%
3476418 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 41.0 3.14e-01 83.9% 49.6%
3548274 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 46.0 3.66e-01 100.0% 56.7%
3991560 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 3.54e-01 85.7% 66.3%
3919585 220.1.1.154 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.53 42.0 3.04e-01 87.5% 41.2%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.53 38.0 3.48e-01 94.6% 57.3%
3737140 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.52 40.0 2.55e-01 87.5% 21.3%
4432330 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.52 37.0 3.86e-01 94.6% 86.0%
3590812 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 35.0 3.46e-01 91.1% 66.7%
3192398 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 41.0 2.51e-01 100.0% 39.4%
4170351 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.52 36.0 3.35e-01 94.6% 56.0%
3992596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 2.81e-01 85.7% 30.0%
3500814 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.31e-01 96.4% 59.2%