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NC_070778.1__YP_010650700.1__PP425_gp292__00160

Bact-Vir

NC_070778.1__YP_010650700.1__PP425_gp292__00160

Identity

Accession:
NC_070778 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kanagawavirus› Enterobacter_phage_vB_EclM_Q7622

TaxID: 2908628

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 33.0 3.92e-01 98.2% 66.7%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.65 57.0 4.76e-01 100.0% 85.0%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 49.0 4.16e-01 91.2% 77.6%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 47.0 3.58e-01 87.7% 63.2%
4rqyA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 52.0 4.09e-01 100.0% 59.3%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 43.0 3.03e-01 80.7% 94.3%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.59 42.0 2.96e-01 75.4% 38.1%
3q6oA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 41.0 3.41e-01 71.9% 81.6%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 4.29e-01 93.0% 72.4%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 46.0 3.47e-01 93.0% 52.8%
5dteA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 43.0 3.32e-01 89.5% 56.2%
3gbyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 45.0 3.63e-01 100.0% 91.3%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 48.0 4.09e-01 100.0% 77.2%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 41.0 3.02e-01 87.7% 69.0%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 44.0 3.58e-01 100.0% 73.2%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.53 41.0 3.07e-01 100.0% 32.2%
4jz8B00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.53 37.0 2.41e-01 75.4% 43.1%
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.52 39.0 2.87e-01 87.7% 98.4%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.46e-01 100.0% 80.3%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.52 41.0 3.23e-01 94.7% 95.3%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.08e-01 84.2% 85.4%
1egiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 42.0 3.44e-01 100.0% 77.5%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.64e-01 100.0% 64.2%
1vr9A01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.52 38.0 3.74e-01 86.0% 75.0%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.38e-01 100.0% 75.7%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 35.0 2.88e-01 71.9% 52.6%
1wmzA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 42.0 3.32e-01 98.2% 76.4%
5i9eA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 34.0 2.89e-01 71.9% 89.4%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.77e-01 93.0% 96.2%
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 43.0 3.43e-01 100.0% 60.9%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 33.0 3.73e-01 91.2% 100.0%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 44.0 3.42e-01 100.0% 56.9%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 42.0 3.04e-01 93.0% 46.6%
3jq0A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 39.0 2.37e-01 93.0% 89.5%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 41.0 3.05e-01 93.0% 60.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028523 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.66 58.0 4.90e-01 100.0% 89.5%
3761880 356.1.1.0 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors 0.64 31.0 3.80e-01 93.0% 100.0%
3923043 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.62 53.0 4.48e-01 100.0% 87.0%
3738814 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.60 50.0 3.18e-01 96.5% 34.4%
3191651 213.1.1.44 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ATE_C 0.57 41.0 3.04e-01 78.9% 50.0%
3249313 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.56 43.0 3.24e-01 100.0% 32.7%
3803377 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.55 42.0 3.33e-01 100.0% 37.7%
3808127 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.55 42.0 3.29e-01 100.0% 36.3%
3462898 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.55 40.0 2.86e-01 78.9% 41.1%
3373766 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.54 42.0 3.13e-01 100.0% 32.7%
3422531 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.54 41.0 3.85e-01 100.0% 65.3%
3645831 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.54 41.0 3.10e-01 100.0% 31.6%
3284480 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.54 41.0 3.04e-01 87.7% 40.6%
3437437 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 36.0 3.14e-01 75.4% 51.4%
4396206 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.53 40.0 3.95e-01 91.2% 80.0%
3473648 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.52 35.0 2.36e-01 73.7% 34.3%
3634704 2004.1.1.176 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.52 41.0 2.80e-01 94.7% 88.8%
2507442 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 41.0 3.05e-01 94.7% 39.0%
D2 high residues 64-127
PDB
Domain cluster: rep: OR122689.1__WLI71753.1__CPTAKMNP4_131__00126__D6-69
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26894.1 best Phage_T4_Y07C 84.8 6.80e-24 98.4% 98.4%