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NC_070778.1__YP_010650792.1__PP425_gp200__00252

Bact-Vir

NC_070778.1__YP_010650792.1__PP425_gp200__00252

Identity

Accession:
NC_070778 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Kanagawavirus› Enterobacter_phage_vB_EclM_Q7622

TaxID: 2908628

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: rep: LC483177.1__BBK09181.1__X__00067__D2-73
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8himB01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.63 56.0 4.41e-01 98.6% 100.0%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 47.0 3.67e-01 100.0% 36.6%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.60 43.0 4.61e-01 86.3% 88.9%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 52.0 4.02e-01 100.0% 68.2%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 49.0 3.64e-01 98.6% 48.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.81e-01 94.5% 50.0%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.57 47.0 3.86e-01 91.8% 51.4%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 38.0 2.96e-01 98.6% 31.7%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.55 43.0 3.67e-01 100.0% 49.6%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 44.0 3.61e-01 91.8% 88.1%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 45.0 4.28e-01 100.0% 97.8%
2qkbA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 39.0 3.17e-01 78.1% 82.2%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 3.21e-01 87.7% 72.4%
3bp1A02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.53 47.0 3.87e-01 100.0% 73.7%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 45.0 3.71e-01 100.0% 58.5%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.01e-01 94.5% 35.0%
1u9tA02 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 35.0 2.81e-01 72.6% 55.0%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.37e-01 97.3% 79.9%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 45.0 3.24e-01 97.3% 66.7%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.83e-01 98.6% 42.2%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.51 39.0 3.29e-01 82.2% 100.0%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.46e-01 97.3% 71.2%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 43.0 2.78e-01 100.0% 32.5%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.68 53.0 4.32e-01 84.9% 94.3%
4971247 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.66 44.0 4.29e-01 86.3% 62.5%
5054384 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.65 44.0 4.49e-01 80.8% 72.9%
3429751 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.64 44.0 4.81e-01 83.6% 88.3%
5048797 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.56 42.0 3.90e-01 83.6% 90.5%
5080202 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 32.0 2.66e-01 91.8% 33.6%
396038 4221.1.1.2 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PHA01746 0.54 45.0 4.28e-01 100.0% 97.8%
3282845 304.8.1.26 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3145 0.54 39.0 3.10e-01 75.3% 100.0%
5054600 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.54 36.0 3.06e-01 71.2% 42.6%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 31.0 3.23e-01 90.4% 60.0%
4218926 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 41.0 3.47e-01 80.8% 84.2%
3968468 4152.2.1.0 ↗ a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.54 38.0 3.77e-01 83.6% 70.7%
3613161 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.54 41.0 3.03e-01 86.3% 75.1%
4502261 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 42.0 3.52e-01 84.9% 83.2%
4636438 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 42.0 3.53e-01 84.9% 85.8%
4144742 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 41.0 3.45e-01 82.2% 84.2%
4085391 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 43.0 3.35e-01 97.3% 78.1%
4486641 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.52 44.0 2.47e-01 100.0% 41.3%
5035283 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.51 41.0 3.42e-01 86.3% 96.0%
3926618 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 40.0 3.48e-01 87.7% 85.8%
4098000 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 37.0 3.28e-01 80.8% 74.2%
4255589 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.51 44.0 4.04e-01 100.0% 79.0%
3599742 5.1.5.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 0.51 38.0 2.39e-01 83.6% 14.2%
3326324 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 36.0 3.75e-01 84.9% 78.6%
3199763 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.51 41.0 3.55e-01 93.2% 80.0%
3307236 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 39.0 3.43e-01 87.7% 91.7%
3977405 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.51 37.0 3.31e-01 80.8% 56.0%
3512065 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 34.0 3.60e-01 91.8% 76.9%