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NC_070779.1__YP_010843974.1__PP427_gp118__00118

Bact-Vir

NC_070779.1__YP_010843974.1__PP427_gp118__00118

Identity

Accession:
NC_070779 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Moonvirus› Salmonella_phage_KM16

TaxID: 2797303

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-160
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26816.1 best Mod_ADP_RT 34.1 2.40e-08 98.4% 55.2%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.79 56.0 4.49e-01 100.0% 39.3%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.72 60.0 5.12e-01 100.0% 56.9%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.69 61.0 5.13e-01 100.0% 58.4%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 59.0 4.94e-01 100.0% 56.5%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.68 31.0 4.56e-01 77.3% 95.1%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 29.0 4.07e-01 78.9% 88.3%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 30.0 4.30e-01 79.7% 94.9%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 61.0 5.01e-01 100.0% 59.4%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.64 54.0 4.46e-01 100.0% 52.8%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.63 32.0 3.92e-01 80.5% 75.6%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 31.0 4.46e-01 83.6% 100.0%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 32.0 4.12e-01 78.1% 89.2%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 33.0 3.75e-01 85.9% 69.4%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 31.0 4.05e-01 75.8% 97.1%
2d54A02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.56 38.0 4.04e-01 85.9% 80.2%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.54 39.0 3.99e-01 87.5% 79.3%
3uj9A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 3.33e-01 83.6% 51.9%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.53 31.0 3.29e-01 94.5% 62.4%
7vkcA01 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.51 37.0 3.41e-01 75.8% 90.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4424922 237.1.1.34 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART, ADPrib_exo_Tox 0.86 59.0 4.71e-01 100.0% 39.0%
4157545 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.85 62.0 5.85e-01 100.0% 64.0%
3886084 237.1.1.2 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.83 61.0 4.92e-01 100.0% 43.1%
2547952 237.1.1.34 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART, ADPrib_exo_Tox 0.79 56.0 4.49e-01 100.0% 39.3%
3955636 604.12.1.106 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF28475 0.77 32.0 4.23e-01 77.3% 68.0%
5002349 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.75 31.0 4.50e-01 79.7% 81.5%
3660125 3711.1.1.4 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 0.74 33.0 4.05e-01 79.7% 64.7%
157262 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.68 59.0 4.91e-01 100.0% 56.2%
3976486 3826.1.1.1 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal 0.66 34.0 4.05e-01 89.1% 72.2%
3605626 192.12.1.0 ↗ alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM 0.65 39.0 4.32e-01 75.8% 73.3%
7442 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.65 61.0 5.01e-01 100.0% 59.4%
3226759 109.4.1.464 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-T 0.62 45.0 2.80e-01 74.2% 24.5%
3646784 109.4.1.1407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.61 49.0 3.20e-01 85.2% 34.4%
3481122 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 38.0 4.25e-01 78.9% 87.0%
3635122 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.50 35.0 2.69e-01 71.1% 61.4%