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NC_070779.1__YP_010844083.1__PP427_gp227__00227

Bact-Vir

NC_070779.1__YP_010844083.1__PP427_gp227__00227

Identity

Accession:
NC_070779 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Moonvirus› Salmonella_phage_KM16

TaxID: 2797303

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-114
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.62 37.0 3.91e-01 85.6% 66.0%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 36.0 4.45e-01 93.7% 100.0%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 35.0 3.72e-01 97.3% 67.0%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.59 39.0 4.19e-01 82.0% 79.8%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.58 31.0 3.43e-01 96.4% 63.2%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 4.13e-01 74.8% 84.5%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 49.0 4.95e-01 97.3% 94.6%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.57 36.0 4.03e-01 72.1% 83.1%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 46.0 4.78e-01 92.8% 99.0%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 45.0 4.76e-01 91.9% 99.0%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 45.0 4.69e-01 94.6% 98.0%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 28.0 3.74e-01 78.4% 94.7%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 37.0 3.53e-01 78.4% 59.0%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.96e-01 78.4% 81.9%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 36.0 3.40e-01 79.3% 58.5%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 3.36e-01 78.4% 55.9%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 27.0 3.04e-01 75.7% 62.1%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 31.0 3.31e-01 98.2% 69.1%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 30.0 3.83e-01 74.8% 100.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975323 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 36.0 4.01e-01 78.4% 68.9%
4977284 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 36.0 3.34e-01 91.9% 44.3%
4995280 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 43.0 4.21e-01 76.6% 80.8%
4018116 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.83e-01 78.4% 66.9%
6840 223.1.1.19 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › YkuI_C 0.54 40.0 3.65e-01 76.6% 64.1%
5060007 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 40.0 3.76e-01 78.4% 95.6%
3587052 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.53 34.0 3.64e-01 80.2% 73.7%
3168064 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.41e-01 78.4% 51.9%
4440297 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 38.0 3.56e-01 76.6% 60.0%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 38.0 3.89e-01 78.4% 78.2%
4994595 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 39.0 3.74e-01 82.0% 91.1%
3407363 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 37.0 3.38e-01 76.6% 57.2%
3722450 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 37.0 3.41e-01 75.7% 84.1%
3701728 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.51 37.0 2.80e-01 76.6% 70.0%
3787986 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.51 38.0 3.52e-01 79.3% 62.9%
3996654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 37.0 3.76e-01 76.6% 84.5%
3473216 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.50 37.0 3.28e-01 78.4% 53.8%
3742732 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.50 37.0 3.38e-01 79.3% 58.1%