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NC_070780.1__YP_010651107.1__PP428_gp270__00270

Bact-Vir

NC_070780.1__YP_010651107.1__PP428_gp270__00270

Identity

Accession:
NC_070780 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gaprivervirus› Escherichia_phage_vB_EcoM_RZ

TaxID: 2893954

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17600.8 best DUF5496 40.6 3.00e-10 100.0% 83.9%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j3vA02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.73 56.0 3.97e-01 81.1% 63.2%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 43.0 5.39e-01 85.1% 100.0%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.67 47.0 5.03e-01 87.8% 85.7%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 52.0 4.44e-01 87.8% 60.5%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.64 55.0 3.86e-01 98.6% 75.7%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 51.0 4.14e-01 90.5% 68.8%
4huzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 41.0 3.15e-01 86.5% 30.7%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 48.0 3.93e-01 90.5% 55.6%
2jemA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.59 42.0 2.95e-01 90.5% 23.7%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 52.0 4.13e-01 100.0% 90.3%
1vc9A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 46.0 3.98e-01 89.2% 67.2%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 3.28e-01 86.5% 97.2%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.90e-01 83.8% 84.8%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.77e-01 79.7% 70.6%
1hztA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 47.0 3.81e-01 97.3% 98.0%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 42.0 3.29e-01 81.1% 65.5%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 47.0 3.84e-01 98.6% 95.3%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.55 35.0 3.90e-01 71.6% 90.6%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.55 40.0 3.25e-01 82.4% 39.1%
4k3bA05 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 46.0 4.54e-01 95.9% 93.7%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.54 45.0 3.67e-01 93.2% 92.4%
7trwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 29.0 2.66e-01 85.1% 37.6%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 43.0 3.64e-01 89.2% 62.6%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 45.0 3.27e-01 91.9% 93.1%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.54 40.0 3.60e-01 82.4% 66.4%
5uayA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 40.0 3.91e-01 82.4% 81.7%
3iuzA00 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.52 41.0 2.72e-01 86.5% 72.5%
4ad9A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 41.0 2.99e-01 85.1% 78.9%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 39.0 3.07e-01 81.1% 79.5%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 37.0 2.73e-01 75.7% 53.5%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.52 40.0 3.36e-01 87.8% 97.9%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.75e-01 89.2% 75.6%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 43.0 3.87e-01 97.3% 71.0%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.50 39.0 3.15e-01 85.1% 96.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956395 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.81 57.0 6.52e-01 89.2% 98.2%
5015989 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.81 56.0 6.37e-01 89.2% 96.4%
5042402 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.78 59.0 6.46e-01 86.5% 96.7%
3172109 5095.1.1.4 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › Flocculin 0.73 40.0 5.25e-01 90.5% 100.0%
308103 237.1.1.8 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.73 56.0 3.96e-01 81.1% 62.6%
4287081 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 58.0 4.84e-01 89.2% 60.8%
2407461 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.69 56.0 4.66e-01 89.2% 58.8%
3802388 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.68 61.0 5.89e-01 98.6% 88.0%
5022325 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.66 54.0 4.82e-01 86.5% 71.0%
4013068 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.66 53.0 4.18e-01 86.5% 79.3%
5038614 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 53.0 4.45e-01 90.5% 68.5%
3741586 221.4.1.24 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 0.65 53.0 3.56e-01 90.5% 34.5%
4640974 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 52.0 4.47e-01 90.5% 63.3%
4189243 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 50.0 4.22e-01 89.2% 58.5%
2449257 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 50.0 3.36e-01 87.8% 35.6%
3619212 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 48.0 3.17e-01 83.8% 22.9%
3516360 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.62 43.0 3.91e-01 73.0% 98.0%
4926970 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 53.0 4.25e-01 95.9% 93.8%
4952914 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.68e-01 75.7% 93.2%
4937938 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 49.0 4.16e-01 89.2% 65.3%
3282801 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 49.0 3.90e-01 90.5% 59.4%
4327607 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 47.0 3.63e-01 89.2% 53.3%
5061791 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 47.0 3.97e-01 89.2% 65.4%
3517917 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 40.0 4.20e-01 85.1% 80.0%
3963489 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.58 45.0 3.69e-01 87.8% 62.7%
4958890 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 42.0 4.14e-01 82.4% 72.5%
3504233 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.58 40.0 3.66e-01 86.5% 54.0%
4136329 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 48.0 3.77e-01 95.9% 84.7%
3485197 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.57 37.0 2.89e-01 98.6% 31.2%
3508135 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 42.0 4.11e-01 79.7% 95.0%
3933581 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.56 44.0 3.89e-01 86.5% 58.2%
1173463 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.56 41.0 4.05e-01 83.8% 72.8%
3170117 59.1.2.5 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › PF31260 0.55 45.0 4.08e-01 91.9% 77.1%
3514143 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.48e-01 74.3% 98.1%
3640795 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.54 44.0 3.18e-01 89.2% 43.3%
3535733 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 41.0 3.37e-01 82.4% 86.4%
3288269 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 42.0 3.53e-01 89.2% 62.1%
4084495 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.53 42.0 3.76e-01 85.1% 84.8%
4245798 508.1.1.1 ↗ a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.53 40.0 3.29e-01 81.1% 55.7%
3690510 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.53 42.0 3.70e-01 85.1% 82.7%
4990211 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.53 42.0 3.86e-01 87.8% 100.0%
3737341 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 41.0 3.40e-01 83.8% 73.1%
3609057 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 42.0 3.51e-01 93.2% 63.4%
1684137 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.52 41.0 2.72e-01 91.9% 79.8%
3626342 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 43.0 3.63e-01 100.0% 99.3%
3789052 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.52 44.0 2.85e-01 94.6% 30.7%
5061016 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.51 42.0 2.97e-01 89.2% 35.4%
4878958 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 38.0 3.33e-01 83.8% 64.0%
4025203 508.1.1.1 ↗ a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.51 38.0 3.17e-01 79.7% 56.7%
1291948 508.1.1.1 ↗ a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.51 41.0 3.33e-01 91.9% 97.5%
4176875 76.1.1.1 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.51 41.0 3.06e-01 91.9% 93.3%