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NC_070782.1__YP_010651597.1__PP454_gp055__00232

Bact-Vir

NC_070782.1__YP_010651597.1__PP454_gp055__00232

Identity

Accession:
NC_070782 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Coruscantvirus› Streptomyces_phage_Coruscant

TaxID: 2739834

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-71
PDB
Domain cluster: rep: OR553903.1__WNN94775.1__SEA_PHREDRICK_221__00185__D4-53
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cjhI00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.56 37.0 3.80e-01 70.4% 70.4%
D2 medium residues 124-192
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.65 44.0 3.59e-01 71.0% 82.3%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.58 36.0 3.04e-01 89.9% 36.1%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.19e-01 73.9% 39.0%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.62e-01 87.0% 64.1%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.56 42.0 3.32e-01 79.7% 66.7%
1f97A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.50e-01 75.4% 64.7%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 45.0 3.17e-01 89.9% 50.7%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.29e-01 75.4% 70.6%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 38.0 4.03e-01 73.9% 98.3%
5f1mA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 45.0 3.05e-01 91.3% 50.0%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.25e-01 73.9% 63.4%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 45.0 3.66e-01 100.0% 74.5%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.22e-01 75.4% 75.7%
2yn3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.33e-01 89.9% 63.4%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 36.0 2.76e-01 75.4% 54.1%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 43.0 3.46e-01 100.0% 74.8%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.50 42.0 3.50e-01 100.0% 63.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3908962 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.68 39.0 3.27e-01 78.3% 35.5%
3428608 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.66 38.0 3.18e-01 72.5% 33.9%
3833645 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.65 37.0 2.43e-01 71.0% 13.2%
3665792 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.63 37.0 3.06e-01 72.5% 32.5%
3617798 10.32.1.229 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.61 40.0 3.30e-01 89.9% 37.6%
5000378 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.60 45.0 3.80e-01 79.7% 79.1%
5003838 11.1.1.33 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.54 38.0 2.84e-01 75.4% 62.7%
3348433 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 38.0 3.17e-01 92.8% 41.6%
3562855 11.1.1.614 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ZP2 0.54 39.0 3.34e-01 78.3% 70.4%
4996523 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 46.0 3.40e-01 100.0% 81.5%
4993927 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.54 47.0 3.70e-01 100.0% 82.0%
4662876 10.32.1.25 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FlhE 0.53 39.0 3.26e-01 92.8% 45.0%
1489663 10.32.1.25 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FlhE 0.53 39.0 3.29e-01 92.8% 47.0%
5028788 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.53 46.0 3.70e-01 100.0% 73.6%
3395603 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 43.0 3.68e-01 89.9% 80.0%
3399432 382.1.1.14 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 0.53 34.0 3.27e-01 72.5% 56.2%
3289921 11.1.1.424 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2771 0.52 38.0 3.08e-01 78.3% 54.1%
4669348 11.1.1.33 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.52 37.0 2.87e-01 76.8% 51.5%
5045353 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 36.0 3.10e-01 76.8% 47.0%
4957575 1.16.1.0 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I 0.50 35.0 3.39e-01 73.9% 65.0%