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NC_070783.1__YP_010651709.1__PP456_gp157__00096

Bact-Vir

NC_070783.1__YP_010651709.1__PP456_gp157__00096

Identity

Accession:
NC_070783 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-66
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 34.0 3.20e-01 100.0% 42.3%
2e52B01 3.40.91.70 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII 0.60 43.0 3.00e-01 87.3% 21.9%
1oheA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 39.0 2.98e-01 85.7% 30.2%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 46.0 3.79e-01 100.0% 61.9%
6vbkB02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 4.15e-01 100.0% 98.7%
2cufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 31.0 3.05e-01 71.4% 55.6%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 38.0 2.57e-01 82.5% 33.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021927 101.1.1.550 alpha arrays › HTH › HTH › Three-helical HTH › DUF1016_N 0.62 46.0 3.64e-01 88.9% 39.2%
3550549 109.4.1.673 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fanconi_A_N 0.57 45.0 2.70e-01 87.3% 17.1%
3833548 5050.1.1.58 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.55 43.0 3.08e-01 88.9% 30.9%
5030243 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.55 42.0 4.32e-01 92.1% 91.7%
3186664 1081.1.1.1 alpha arrays › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › hDGE_amylase 0.52 39.0 2.85e-01 84.1% 48.0%
4295379 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.51 42.0 3.29e-01 96.8% 62.0%