←Back to structures

NC_070784.1__YP_010651865.1__PP457_gp234__00013

Bact-Vir

NC_070784.1__YP_010651865.1__PP457_gp234__00013

Identity

Accession:
NC_070784 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Faustvirus› Streptomyces_phage_TunaTartare

TaxID: 2848887

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 144-219
PDB
Domain cluster: rep: OQ981145.1__WJZ46647.1__X__00184__D1-66
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06737.20 best Transglycosylas 40.9 3.80e-10 96.0% 85.7%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 78.0 5.98e-01 100.0% 78.9%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 79.0 5.78e-01 100.0% 83.0%
4yf2A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 74.0 6.17e-01 100.0% 68.5%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 75.0 5.78e-01 100.0% 74.7%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 74.0 5.61e-01 100.0% 71.1%
1xsfA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 74.0 6.50e-01 100.0% 71.3%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 75.0 5.50e-01 100.0% 77.6%
2dqaA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 72.0 6.06e-01 100.0% 86.2%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 71.0 5.46e-01 100.0% 85.1%
6v3zA00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.64 57.0 4.34e-01 100.0% 94.9%
4olsA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.64 45.0 3.40e-01 88.2% 30.3%
4mb7A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 44.0 3.68e-01 89.5% 53.1%
1k3xA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 43.0 3.67e-01 86.8% 58.3%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 46.0 4.27e-01 94.7% 99.0%
2ap1A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.09e-01 77.6% 85.5%
1bvp101 1.10.250.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 0.53 45.0 4.00e-01 100.0% 91.7%
3id7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 44.0 2.87e-01 94.7% 90.0%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 41.0 3.53e-01 86.8% 58.5%
3gvcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 40.0 2.87e-01 89.5% 93.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031083 235.1.1.14 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.94 86.0 8.42e-01 94.7% 92.5%
185214 235.1.1.14 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.87 81.0 7.69e-01 100.0% 87.5%
3254511 235.1.1.1 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys 0.86 80.0 7.06e-01 100.0% 74.3%
3260862 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 79.0 6.90e-01 100.0% 70.0%
1175858 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 79.0 5.72e-01 100.0% 79.9%
3945171 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 79.0 6.19e-01 100.0% 71.0%
3838879 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 77.0 6.08e-01 100.0% 75.8%
3979308 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 77.0 5.74e-01 100.0% 77.7%
3385979 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 77.0 5.59e-01 100.0% 63.7%
3222819 235.1.1.12 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Destabilase 0.82 75.0 6.22e-01 100.0% 88.4%
3839661 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 76.0 5.72e-01 100.0% 74.7%
3969917 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 76.0 5.45e-01 100.0% 59.5%
3941811 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.82 75.0 5.67e-01 100.0% 72.4%
4995668 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 75.0 6.30e-01 100.0% 93.5%
3965879 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.81 75.0 5.70e-01 100.0% 71.5%
4530587 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 73.0 5.43e-01 100.0% 77.3%
3978377 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.80 74.0 5.35e-01 100.0% 71.8%
4321901 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 74.0 5.43e-01 100.0% 75.7%
4164050 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 74.0 5.27e-01 100.0% 68.3%
3947473 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 73.0 5.74e-01 100.0% 69.3%
4515466 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 73.0 5.43e-01 100.0% 79.4%
3582448 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 74.0 6.01e-01 98.7% 78.5%
2393514 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 73.0 5.32e-01 100.0% 74.7%
3166094 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 72.0 5.43e-01 100.0% 81.7%
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 72.0 5.54e-01 100.0% 54.9%
4258903 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.78 71.0 5.44e-01 98.7% 82.4%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.77 70.0 5.34e-01 100.0% 76.5%
3960956 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.77 72.0 6.04e-01 100.0% 75.8%
3944103 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.77 71.0 5.24e-01 100.0% 71.7%
3279121 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.72 66.0 6.10e-01 98.7% 80.9%
4968557 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.58 47.0 3.90e-01 92.1% 58.6%
4969565 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.52 40.0 3.27e-01 82.9% 73.1%
3741792 103.8.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.51 31.0 3.20e-01 100.0% 61.3%
3600030 2486.1.1.0 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.51 41.0 2.86e-01 98.7% 23.2%
D2 medium residues 61-122
PDB
Domain cluster: representative