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NC_070784.1__YP_010651982.1__PP457_gp117__00130

Bact-Vir

NC_070784.1__YP_010651982.1__PP457_gp117__00130

Identity

Accession:
NC_070784 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-54
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.90 68.0 6.91e-01 100.0% 82.6%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.85 77.0 5.45e-01 100.0% 57.9%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 77.0 7.16e-01 100.0% 84.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.82 67.0 6.71e-01 100.0% 85.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 73.0 6.72e-01 100.0% 76.3%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 73.0 6.62e-01 100.0% 74.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 65.0 6.62e-01 100.0% 91.3%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 72.0 6.42e-01 100.0% 73.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.78 63.0 5.84e-01 100.0% 71.7%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 65.0 6.45e-01 100.0% 89.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 66.0 6.35e-01 100.0% 86.8%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.74 58.0 4.16e-01 100.0% 30.5%
2haxA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 49.0 5.07e-01 85.1% 74.4%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 57.0 4.14e-01 100.0% 32.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 64.0 5.32e-01 100.0% 66.7%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 5.53e-01 97.9% 69.2%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 6.22e-01 100.0% 94.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.26e-01 100.0% 76.9%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 4.47e-01 93.6% 47.0%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.11e-01 100.0% 65.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 4.93e-01 100.0% 65.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.52e-01 100.0% 88.3%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 4.91e-01 100.0% 78.8%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 4.85e-01 100.0% 63.1%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 51.0 4.15e-01 100.0% 43.5%
6mavB02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 52.0 4.31e-01 89.4% 87.4%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.65 54.0 4.50e-01 97.9% 87.9%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 55.0 4.25e-01 100.0% 49.6%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 4.67e-01 100.0% 78.7%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.50e-01 100.0% 80.8%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 3.49e-01 95.7% 29.0%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 54.0 4.63e-01 100.0% 79.7%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 51.0 3.76e-01 100.0% 60.3%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.60 50.0 4.80e-01 100.0% 89.7%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 3.69e-01 100.0% 40.3%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.89e-01 100.0% 78.1%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.59 47.0 4.16e-01 89.4% 66.7%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 3.65e-01 100.0% 90.6%
3m4uB00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 49.0 3.03e-01 100.0% 29.0%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 44.0 3.65e-01 97.9% 96.2%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 48.0 3.57e-01 100.0% 68.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 44.0 4.12e-01 91.5% 80.0%
1svbA04 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.44e-01 87.2% 84.4%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.27e-01 97.9% 85.3%
1vwxd00 3.10.440.10 Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 0.53 37.0 2.91e-01 76.6% 85.0%
6w1kA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.52 41.0 2.58e-01 91.5% 19.9%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.52 46.0 3.83e-01 100.0% 56.6%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.52 40.0 3.21e-01 95.7% 85.7%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.52 45.0 3.34e-01 100.0% 41.1%
2grvA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 43.0 3.01e-01 100.0% 86.2%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 40.0 3.43e-01 91.5% 78.6%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.50 40.0 3.92e-01 100.0% 81.5%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4585317 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.94 74.0 6.95e-01 100.0% 70.9%
3590784 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.92 70.0 6.22e-01 100.0% 58.5%
4547820 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 79.0 5.80e-01 100.0% 41.9%
3820065 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 76.0 7.19e-01 100.0% 80.0%
3222146 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.86 76.0 6.68e-01 100.0% 67.7%
3476178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 74.0 5.28e-01 100.0% 35.8%
3407915 4.1.3.2 beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › SHCBP_N 0.86 79.0 5.44e-01 100.0% 43.6%
3296833 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.85 78.0 5.40e-01 100.0% 34.8%
3751502 4.1.1.365 beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.84 77.0 6.67e-01 100.0% 68.6%
3482225 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.83 75.0 5.35e-01 100.0% 36.9%
3394559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 75.0 5.66e-01 100.0% 72.4%
4984882 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.82 75.0 6.43e-01 100.0% 65.7%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.82 75.0 6.82e-01 100.0% 76.7%
4951886 3174.4.1.0 beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.81 72.0 5.81e-01 100.0% 73.3%
3429053 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.81 70.0 4.61e-01 100.0% 25.3%
4203592 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 75.0 6.62e-01 100.0% 72.3%
3886139 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 73.0 6.52e-01 100.0% 76.9%
3302816 4.1.1.235 beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.80 73.0 5.20e-01 100.0% 81.5%
3780847 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.80 74.0 5.01e-01 100.0% 31.3%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.79 72.0 5.22e-01 100.0% 40.8%
3421158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 69.0 6.31e-01 100.0% 75.0%
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 65.0 6.20e-01 100.0% 79.6%
3598499 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 72.0 4.96e-01 100.0% 34.3%
3833012 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.77 71.0 5.68e-01 100.0% 64.7%
3342430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 66.0 5.64e-01 100.0% 60.0%
3678872 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.77 71.0 5.92e-01 100.0% 82.7%
3339162 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.77 70.0 4.96e-01 100.0% 45.4%
3834303 109.4.1.257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.77 66.0 3.73e-01 100.0% 9.9%
3368254 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.76 65.0 6.24e-01 100.0% 81.8%
3450200 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 65.0 5.34e-01 100.0% 52.9%
3315510 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.76 67.0 5.07e-01 100.0% 71.8%
3363751 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.76 66.0 5.12e-01 100.0% 75.2%
3625263 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 70.0 5.31e-01 100.0% 60.0%
3675653 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.75 69.0 5.79e-01 100.0% 78.7%
3475240 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.75 68.0 6.48e-01 100.0% 85.5%
3819397 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.75 69.0 5.66e-01 100.0% 63.7%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 66.0 5.94e-01 100.0% 90.8%
3825252 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 68.0 5.39e-01 100.0% 67.8%
3612092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.68e-01 100.0% 90.7%
3476336 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.75 68.0 5.88e-01 100.0% 82.9%
3251940 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.74 66.0 5.64e-01 100.0% 62.7%
3684460 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.74 66.0 5.21e-01 100.0% 81.1%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.74 65.0 5.73e-01 100.0% 71.4%
3918299 4.1.1.376 beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.74 65.0 5.69e-01 100.0% 70.0%
3709353 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.72 57.0 5.61e-01 100.0% 80.0%
3672185 304.59.1.4 a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › GUB_WAK_bind 0.72 62.0 4.11e-01 97.9% 82.1%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.72 61.0 5.26e-01 100.0% 60.0%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 64.0 5.34e-01 100.0% 67.5%
1545879 4.1.1.120 beta barrels › SH3 › SH3 › SH3 › SH3_16 0.72 64.0 4.95e-01 100.0% 97.0%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 63.0 5.52e-01 100.0% 81.4%
3706000 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 61.0 5.27e-01 100.0% 82.7%
4532859 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.57e-01 100.0% 86.7%
3700732 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 55.0 4.30e-01 85.1% 72.6%
3490689 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 62.0 5.40e-01 100.0% 74.3%
3596994 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.79e-01 100.0% 90.0%
3700484 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 60.0 3.72e-01 100.0% 31.9%
5037223 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.68 55.0 5.06e-01 87.2% 70.0%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.68 56.0 4.84e-01 100.0% 58.7%
3743614 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.67 59.0 5.43e-01 100.0% 76.7%
3591158 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 54.0 3.95e-01 89.4% 33.6%
4931113 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.67 53.0 4.28e-01 100.0% 50.0%
3520064 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.66 53.0 4.74e-01 100.0% 61.4%
3171521 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.63 51.0 5.09e-01 91.5% 90.0%
3235763 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.60 47.0 4.12e-01 100.0% 55.0%
4996733 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 47.0 4.34e-01 100.0% 82.9%
3212496 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 48.0 3.97e-01 95.7% 91.1%
3991018 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.57 48.0 4.13e-01 100.0% 78.8%
4126278 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.57 45.0 3.05e-01 100.0% 35.3%
4492826 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 45.0 3.49e-01 91.5% 43.5%
5019700 5090.1.1.6 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.57 50.0 3.95e-01 100.0% 59.0%
3587340 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 47.0 4.04e-01 100.0% 89.4%
3513281 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 46.0 3.95e-01 100.0% 55.3%
5003437 5090.1.1.6 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.56 49.0 3.43e-01 100.0% 41.3%
3677760 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.56 43.0 2.76e-01 91.5% 88.1%
3450141 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.55 45.0 3.65e-01 97.9% 59.0%
3695678 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.54 45.0 2.64e-01 97.9% 21.4%
3289804 7523.1.1.3 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.53 41.0 2.89e-01 91.5% 48.9%
3618227 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 42.0 2.82e-01 100.0% 39.1%
3458331 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 43.0 2.79e-01 100.0% 41.5%
3429464 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.51 43.0 3.04e-01 100.0% 81.6%
5057921 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 44.0 2.77e-01 100.0% 36.7%
4946845 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.50 36.0 2.36e-01 80.9% 18.1%