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NC_070786.1__YP_010652315.1__PP460_gp001__00001

Bact-Vir

NC_070786.1__YP_010652315.1__PP460_gp001__00001

Identity

Accession:
NC_070786 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wakandavirus› Streptomyces_phage_Muntaha

TaxID: 2713269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.77 59.0 5.63e-01 100.0% 71.1%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.76 69.0 6.29e-01 100.0% 95.3%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.75 49.0 4.00e-01 100.0% 37.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.71 52.0 3.85e-01 100.0% 30.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.66 55.0 4.67e-01 100.0% 55.0%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 42.0 3.86e-01 100.0% 49.4%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 51.0 4.42e-01 100.0% 54.5%
3e1uA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 56.0 4.12e-01 100.0% 37.0%
2huhA01 2.60.40.1600 Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like 0.64 45.0 3.58e-01 100.0% 36.0%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 49.0 4.36e-01 100.0% 57.9%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 3.52e-01 100.0% 38.0%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.62 53.0 4.16e-01 100.0% 45.0%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.85e-01 100.0% 50.5%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 53.0 4.21e-01 100.0% 90.1%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 52.0 3.39e-01 100.0% 32.0%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.60 51.0 3.75e-01 100.0% 72.0%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.50e-01 100.0% 41.1%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 38.0 3.35e-01 100.0% 42.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 45.0 4.08e-01 100.0% 58.5%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 47.0 4.02e-01 100.0% 53.2%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 50.0 4.17e-01 100.0% 85.2%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 52.0 4.24e-01 100.0% 78.3%
3up6A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 50.0 3.81e-01 100.0% 56.6%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.58 44.0 3.64e-01 98.5% 45.7%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.58 40.0 3.17e-01 72.3% 64.7%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 42.0 3.09e-01 100.0% 25.9%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.58 40.0 3.57e-01 70.8% 84.3%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.58 49.0 3.98e-01 100.0% 71.9%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.57 42.0 3.30e-01 100.0% 33.5%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.57 46.0 4.20e-01 100.0% 65.2%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 40.0 3.39e-01 100.0% 41.1%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.60e-01 100.0% 45.5%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.56 47.0 4.73e-01 100.0% 92.3%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 44.0 3.49e-01 98.5% 39.5%
2atpD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.05e-01 98.5% 63.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 47.0 4.25e-01 95.4% 93.5%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.55 39.0 3.23e-01 96.9% 43.2%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 40.0 3.00e-01 78.5% 47.6%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.12e-01 100.0% 35.0%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.66e-01 100.0% 41.4%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.13e-01 100.0% 30.9%
4d0qA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 48.0 3.62e-01 100.0% 53.4%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.27e-01 100.0% 66.2%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 44.0 3.91e-01 100.0% 62.0%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 44.0 3.88e-01 95.4% 69.5%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 36.0 3.13e-01 100.0% 41.7%
1axiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.27e-01 100.0% 46.5%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.76e-01 98.5% 61.1%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.54 44.0 3.85e-01 100.0% 59.4%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 46.0 3.04e-01 100.0% 78.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 46.0 3.04e-01 100.0% 84.1%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.41e-01 100.0% 45.9%
3p1vA01 2.60.40.3250 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain 0.53 44.0 3.53e-01 100.0% 44.9%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 45.0 3.94e-01 100.0% 77.4%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.23e-01 98.5% 40.1%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.52 42.0 3.36e-01 100.0% 43.9%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.52 37.0 3.34e-01 100.0% 50.5%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 3.59e-01 100.0% 56.9%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.29e-01 100.0% 38.8%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.68e-01 100.0% 61.6%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.05e-01 100.0% 32.6%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.25e-01 93.8% 68.9%
1bteA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 36.0 3.28e-01 98.5% 55.4%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074648 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.84 66.0 6.25e-01 100.0% 72.0%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 65.0 6.83e-01 100.0% 91.5%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.82 62.0 6.64e-01 100.0% 94.5%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.82 64.0 6.47e-01 100.0% 84.4%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 63.0 6.60e-01 100.0% 90.0%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 63.0 6.61e-01 100.0% 93.1%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 63.0 5.35e-01 100.0% 53.5%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.80 62.0 6.11e-01 100.0% 77.1%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 62.0 5.91e-01 100.0% 72.0%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.80 62.0 5.23e-01 100.0% 51.4%
4943401 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.79 63.0 5.78e-01 100.0% 65.9%
2106285 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 61.0 5.12e-01 100.0% 50.0%
3508713 382.1.1.25 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.65 58.0 4.76e-01 100.0% 54.2%
3276129 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 55.0 5.08e-01 100.0% 85.6%
3483628 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 56.0 4.47e-01 100.0% 48.5%
3395915 302.1.1.3 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › PF29551 0.61 53.0 3.93e-01 100.0% 41.1%
3347390 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 3.91e-01 100.0% 55.3%
4025617 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.29e-01 100.0% 32.5%
3782638 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.58 50.0 3.72e-01 100.0% 70.8%
4027866 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 50.0 3.78e-01 100.0% 78.2%
3998442 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 48.0 3.50e-01 100.0% 34.7%
3577596 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.58 50.0 3.94e-01 100.0% 70.3%
3536943 712.1.1.0 ↗ beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain 0.58 48.0 3.79e-01 100.0% 97.4%
3680686 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.57 46.0 3.53e-01 95.4% 41.2%
4473009 712.1.1.0 ↗ beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain 0.56 47.0 3.73e-01 100.0% 97.3%
3399011 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.56 48.0 3.79e-01 100.0% 62.8%
3889511 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.55 40.0 3.72e-01 98.5% 60.0%
3740761 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 45.0 3.21e-01 95.4% 36.4%
5064795 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.55 47.0 3.93e-01 100.0% 97.5%
3687186 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 48.0 4.03e-01 100.0% 95.7%
4000498 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.53e-01 93.8% 80.0%
3601389 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.32e-01 100.0% 70.4%
4560677 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.54 42.0 2.92e-01 87.7% 44.3%
3882078 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 41.0 3.24e-01 100.0% 40.0%
3795522 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.53 47.0 3.72e-01 100.0% 88.1%
3411043 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.53 46.0 3.55e-01 100.0% 60.4%
4952738 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.53 42.0 3.68e-01 100.0% 55.0%
3407484 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.53 46.0 3.55e-01 100.0% 60.1%
4304353 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.53 45.0 3.50e-01 100.0% 56.1%
3623120 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 3.56e-01 100.0% 82.0%
3245889 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.61e-01 100.0% 88.6%
3646564 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 46.0 2.71e-01 100.0% 14.4%
3928420 3680.1.1.0 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain 0.52 43.0 3.45e-01 100.0% 77.3%
4120726 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.52 39.0 3.52e-01 100.0% 57.8%
4944314 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 32.0 2.67e-01 81.5% 30.4%
3649476 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.52 45.0 2.86e-01 100.0% 22.6%
3395613 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.51 44.0 3.35e-01 100.0% 57.0%
5077592 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.59e-01 100.0% 91.2%
3385387 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.50 34.0 2.05e-01 80.0% 8.2%
3833740 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.50 44.0 2.61e-01 100.0% 16.9%
3619736 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.50 40.0 3.34e-01 100.0% 48.0%
5050481 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 2.88e-01 76.9% 36.0%