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NC_070786.1__YP_010652324.1__PP460_gp010__00010

Bact-Vir

NC_070786.1__YP_010652324.1__PP460_gp010__00010

Identity

Accession:
NC_070786 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wakandavirus› Streptomyces_phage_Muntaha

TaxID: 2713269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-68
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 37.0 4.70e-01 75.0% 94.7%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.65 41.0 4.32e-01 70.6% 71.0%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 37.0 4.51e-01 73.5% 90.7%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 37.0 3.94e-01 76.5% 75.0%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.56 40.0 2.60e-01 79.4% 48.9%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 32.0 3.47e-01 86.8% 66.7%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.55 39.0 4.34e-01 80.9% 98.1%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 42.0 3.15e-01 83.8% 72.1%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.53 36.0 3.72e-01 88.2% 75.4%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 38.0 3.01e-01 79.4% 91.4%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 40.0 3.07e-01 83.8% 90.0%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.22e-01 88.2% 48.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.97e-01 80.9% 100.0%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 2.99e-01 86.8% 87.6%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 38.0 3.73e-01 80.9% 80.8%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.95e-01 100.0% 71.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.68e-01 86.8% 85.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037381 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.70 47.0 5.28e-01 83.8% 94.0%
3228875 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 36.0 3.97e-01 77.9% 61.8%
3040109 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.68 44.0 5.10e-01 88.2% 97.9%
3990974 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 46.0 5.22e-01 82.4% 100.0%
3689240 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.63 54.0 3.62e-01 100.0% 42.6%
3932921 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 4.71e-01 76.5% 87.3%
4026161 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.62 45.0 3.70e-01 77.9% 83.2%
3585646 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 37.0 4.35e-01 83.8% 100.0%
3394681 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.59 35.0 4.07e-01 77.9% 88.9%
3992030 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 45.0 3.90e-01 88.2% 51.8%
3584345 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.59 42.0 3.37e-01 75.0% 45.9%
4163789 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.57 42.0 3.67e-01 79.4% 100.0%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.57 40.0 4.23e-01 91.2% 92.7%
4491893 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.57 40.0 3.53e-01 75.0% 100.0%
3375181 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.56 41.0 3.30e-01 79.4% 78.6%
5028212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 47.0 3.78e-01 100.0% 83.8%
2774420 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.56 44.0 3.22e-01 86.8% 68.4%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.56 38.0 4.07e-01 91.2% 90.9%
3413714 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.55 43.0 3.10e-01 89.7% 51.4%
3282933 620.1.1.6 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 0.55 47.0 3.59e-01 100.0% 89.4%
3667651 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 3.74e-01 80.9% 87.8%
3624687 64.1.1.9 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.54 35.0 3.96e-01 88.2% 88.0%
3731518 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.54 38.0 3.72e-01 92.6% 68.0%
3328886 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 39.0 4.27e-01 86.8% 96.4%
3613670 64.1.1.14 ↗ beta meanders › WW domain-like › WW domain › WW domain › PF30846 0.53 37.0 3.50e-01 72.1% 91.3%
4025577 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.53 42.0 3.12e-01 88.2% 62.7%
5026377 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.53 40.0 3.87e-01 85.3% 88.7%
3472863 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.53 39.0 3.38e-01 82.4% 94.1%
5054507 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 40.0 3.92e-01 83.8% 86.7%
3215728 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 34.0 3.55e-01 75.0% 73.3%
3400923 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.52 35.0 3.69e-01 83.8% 81.7%
3512778 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.52 38.0 3.47e-01 79.4% 95.8%
3222612 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 3.64e-01 85.3% 94.7%
4946183 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.50 36.0 3.54e-01 76.5% 81.3%