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NC_070786.1__YP_010652413.1__PP460_gp145__00099

Bact-Vir

NC_070786.1__YP_010652413.1__PP460_gp145__00099

Identity

Accession:
NC_070786 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wakandavirus› Streptomyces_phage_Muntaha

TaxID: 2713269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 58.0 5.54e-01 76.9% 61.7%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 58.0 4.91e-01 71.2% 46.3%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.83 59.0 3.62e-01 75.0% 14.1%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 56.0 4.61e-01 71.2% 59.8%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.81 60.0 4.48e-01 78.8% 42.9%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.75 55.0 4.33e-01 76.9% 40.6%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.73 60.0 3.72e-01 92.3% 19.0%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 4.48e-01 73.1% 68.0%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.71 50.0 4.11e-01 75.0% 87.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 4.20e-01 80.8% 80.8%
5zzjA02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.69 53.0 3.29e-01 84.6% 14.5%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 49.0 3.11e-01 90.4% 16.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3090474 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.93 70.0 4.94e-01 78.8% 29.7%
3243507 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.90 63.0 5.80e-01 73.1% 58.5%
None — 0.87 59.0 3.55e-01 71.2% 11.6%
3958048 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.86 59.0 3.76e-01 71.2% 16.9%
None — 0.85 58.0 4.08e-01 71.2% 24.8%
4052516 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.85 58.0 3.67e-01 71.2% 27.2%
4946097 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.85 58.0 3.57e-01 71.2% 14.0%
3663639 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.85 63.0 4.20e-01 76.9% 27.8%
4619228 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.85 58.0 3.46e-01 71.2% 11.6%
5081162 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 60.0 4.95e-01 75.0% 45.9%
4348494 375.1.1.46 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1g 0.83 56.0 3.36e-01 71.2% 11.0%
4080915 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.80 54.0 3.37e-01 71.2% 13.5%
4963553 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.79 54.0 3.34e-01 71.2% 12.5%
4642847 375.1.1.46 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1g 0.79 54.0 3.28e-01 71.2% 11.9%
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.78 62.0 4.84e-01 84.6% 56.2%
3268716 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 53.0 4.79e-01 73.1% 52.9%
3191582 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.78 55.0 4.07e-01 76.9% 30.0%
4994798 3646.1.1.0 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.77 56.0 3.69e-01 76.9% 20.5%
5070893 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.76 60.0 4.69e-01 84.6% 44.8%
4510175 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.75 51.0 3.13e-01 71.2% 11.7%
4945888 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.72 56.0 4.79e-01 82.7% 60.0%
3978967 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.71 60.0 3.70e-01 100.0% 17.1%
3498965 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 3.91e-01 71.2% 68.4%
4002185 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.54 40.0 3.59e-01 82.7% 54.7%