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NC_070786.1__YP_010652444.1__PP460_gp114__00130

Bact-Vir

NC_070786.1__YP_010652444.1__PP460_gp114__00130

Identity

Accession:
NC_070786 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wakandavirus› Streptomyces_phage_Muntaha

TaxID: 2713269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-93
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.84 65.0 6.36e-01 100.0% 77.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 63.0 5.97e-01 100.0% 70.3%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 61.0 6.39e-01 94.4% 89.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 65.0 6.08e-01 100.0% 72.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 5.56e-01 100.0% 61.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 63.0 5.88e-01 100.0% 69.7%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 66.0 6.89e-01 100.0% 98.0%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 66.0 6.17e-01 98.1% 73.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 67.0 6.35e-01 100.0% 79.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 65.0 6.28e-01 100.0% 81.4%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 64.0 6.42e-01 100.0% 87.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 6.10e-01 100.0% 77.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 5.69e-01 100.0% 69.1%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 66.0 6.55e-01 100.0% 89.5%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 6.68e-01 100.0% 100.0%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.20e-01 100.0% 50.0%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 68.0 6.20e-01 98.1% 80.0%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.76 69.0 5.09e-01 100.0% 60.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.80e-01 98.1% 79.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 63.0 6.42e-01 100.0% 96.2%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.74 66.0 5.28e-01 100.0% 65.4%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 6.01e-01 100.0% 95.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.56e-01 100.0% 86.6%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.66 55.0 4.67e-01 94.4% 87.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.05e-01 100.0% 67.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 57.0 5.60e-01 100.0% 95.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 54.0 3.92e-01 94.4% 59.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.62e-01 100.0% 79.2%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.83e-01 100.0% 85.0%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 50.0 4.06e-01 94.4% 77.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 50.0 3.39e-01 92.6% 67.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.62e-01 100.0% 65.1%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 49.0 3.89e-01 94.4% 72.6%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 46.0 3.77e-01 88.9% 71.6%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.59 47.0 4.08e-01 100.0% 54.9%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 43.0 3.15e-01 90.7% 29.0%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 45.0 3.38e-01 88.9% 32.6%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.58 50.0 4.93e-01 100.0% 96.6%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 3.99e-01 100.0% 76.9%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 45.0 3.63e-01 94.4% 69.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.48e-01 94.4% 90.8%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.56 45.0 4.09e-01 100.0% 64.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.48e-01 100.0% 87.1%
2vqpA01 2.70.20.30 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain 0.54 45.0 3.63e-01 100.0% 70.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.53 43.0 3.57e-01 92.6% 51.0%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.52 37.0 2.72e-01 81.5% 62.5%
3hbxA03 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.51 41.0 3.62e-01 94.4% 88.6%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 70.0 5.78e-01 100.0% 52.2%
3917568 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 70.0 5.33e-01 100.0% 40.9%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.86 69.0 6.41e-01 100.0% 70.8%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.86 68.0 5.37e-01 100.0% 43.8%
3627842 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 70.0 5.85e-01 100.0% 53.3%
3707634 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 69.0 6.94e-01 100.0% 85.5%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 70.0 6.38e-01 100.0% 68.6%
3395150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 72.0 6.97e-01 100.0% 83.3%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 70.0 6.55e-01 100.0% 73.8%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.84 66.0 5.89e-01 100.0% 61.3%
3584364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 67.0 6.93e-01 100.0% 92.0%
3451175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 69.0 6.86e-01 100.0% 87.3%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.83 68.0 4.83e-01 100.0% 32.0%
3226844 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 67.0 5.79e-01 100.0% 58.7%
547 4.1.1.49 ↗ beta barrels › SH3 › SH3 › SH3 › KorB_C 0.82 64.0 6.40e-01 100.0% 81.5%
3407915 4.1.3.2 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › SHCBP_N 0.82 76.0 5.45e-01 100.0% 45.7%
3476478 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 64.0 5.22e-01 100.0% 47.4%
4026282 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 66.0 5.50e-01 100.0% 52.2%
3409299 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 65.0 5.68e-01 100.0% 58.7%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.80 66.0 5.86e-01 100.0% 64.0%
4470603 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.79 71.0 4.98e-01 100.0% 50.9%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 5.77e-01 100.0% 61.3%
3407855 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 63.0 5.29e-01 100.0% 52.2%
3397845 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 69.0 5.56e-01 100.0% 57.1%
3421158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.18e-01 100.0% 81.7%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 69.0 6.17e-01 100.0% 80.0%
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.76 63.0 6.32e-01 100.0% 89.1%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.38e-01 100.0% 57.6%
3853153 4.1.1.134 ↗ beta barrels › SH3 › SH3 › SH3 › MUM1-like_PWWP 0.76 67.0 4.91e-01 100.0% 38.5%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 70.0 6.50e-01 100.0% 92.3%
3834303 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.75 62.0 3.59e-01 100.0% 10.8%
4951886 3174.4.1.0 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.75 65.0 5.48e-01 96.3% 73.3%
3823780 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.75 68.0 6.05e-01 100.0% 73.3%
3847592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 64.0 3.73e-01 100.0% 11.1%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.75 60.0 5.86e-01 100.0% 81.4%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.75 63.0 5.54e-01 100.0% 63.0%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 5.50e-01 100.0% 65.3%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.75 66.0 6.10e-01 100.0% 78.6%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.75 60.0 5.41e-01 100.0% 64.0%
3373298 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 66.0 4.24e-01 98.1% 22.9%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.74 61.0 5.50e-01 100.0% 65.3%
3225748 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.31e-01 100.0% 95.0%
3629316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.21e-01 100.0% 52.0%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.73 62.0 4.12e-01 100.0% 24.3%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.73 64.0 6.21e-01 100.0% 88.3%
3793311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 65.0 6.32e-01 100.0% 96.7%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 4.15e-01 100.0% 24.2%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 64.0 5.72e-01 100.0% 80.0%
2127246 4.8.1.4 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MBT 0.72 60.0 5.55e-01 100.0% 73.9%
3723175 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 64.0 5.39e-01 100.0% 67.8%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 63.0 5.94e-01 98.1% 93.8%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.18e-01 100.0% 73.3%
3879653 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.69 61.0 5.63e-01 100.0% 77.1%
3217770 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 4.77e-01 100.0% 51.0%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 58.0 4.39e-01 100.0% 39.2%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.69 61.0 5.59e-01 100.0% 78.6%
3940729 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.04e-01 100.0% 61.2%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.68 56.0 4.85e-01 100.0% 58.8%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 60.0 5.37e-01 100.0% 88.0%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.61e-01 100.0% 86.2%
4126278 1.1.5.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.67 54.0 3.59e-01 92.6% 35.3%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 58.0 4.86e-01 100.0% 85.3%
4523548 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.66 54.0 4.77e-01 96.3% 74.1%
3819397 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 59.0 5.14e-01 100.0% 70.0%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 56.0 4.74e-01 100.0% 61.1%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.64 56.0 4.96e-01 100.0% 76.2%
4532859 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.39e-01 100.0% 95.0%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.64 50.0 4.57e-01 100.0% 64.0%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.64 55.0 4.90e-01 100.0% 73.8%
4555816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.82e-01 100.0% 67.1%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 56.0 4.81e-01 100.0% 63.5%
4011774 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 53.0 3.66e-01 98.1% 52.4%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.93e-01 100.0% 73.3%
4118973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.62 51.0 4.06e-01 96.3% 71.7%
4409502 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.61 49.0 4.03e-01 94.4% 79.1%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.61 51.0 4.60e-01 100.0% 71.2%
4646862 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.60 50.0 4.07e-01 96.3% 77.3%
3647116 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.60 53.0 4.04e-01 100.0% 67.2%
3658750 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.60 52.0 4.04e-01 100.0% 69.6%
154143 11.9.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH 0.60 52.0 3.34e-01 100.0% 64.9%
3370313 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.59 52.0 3.72e-01 100.0% 52.1%
3580789 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 3.87e-01 100.0% 66.7%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.57 45.0 3.14e-01 92.6% 40.0%
3792948 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 3.91e-01 100.0% 75.5%
3649825 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 46.0 2.80e-01 94.4% 22.6%