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NC_070786.1__YP_010652457.1__PP460_gp101__00143

Bact-Vir

NC_070786.1__YP_010652457.1__PP460_gp101__00143

Identity

Accession:
NC_070786 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Wakandavirus› Streptomyces_phage_Muntaha

TaxID: 2713269

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-62
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mr1D00 3.10.390.10 Alpha Beta › Roll › SAND domain › SAND domain-like 0.59 38.0 3.40e-01 83.9% 43.8%
2yuuA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.57 46.0 4.18e-01 88.7% 71.1%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.55 33.0 3.45e-01 72.6% 64.9%
1xa6A02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 42.0 4.13e-01 85.5% 81.2%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.29e-01 74.2% 58.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 30.0 3.40e-01 72.6% 73.9%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3476046 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.62 50.0 5.22e-01 88.7% 100.0%
3649260 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.61 47.0 4.39e-01 83.9% 86.3%
3578626 4.2.1.2 ↗ beta barrels › SH3 › SAND › SAND › c-SKI_SMAD_bind 0.61 40.0 3.56e-01 88.7% 45.6%
4030229 381.1.1.2 ↗ few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Rsm1 0.61 44.0 4.08e-01 77.4% 95.0%
3842866 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.59 46.0 4.83e-01 88.7% 96.4%
3227035 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.58 45.0 4.57e-01 83.9% 95.0%
3845218 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 40.0 4.01e-01 85.5% 72.3%
3923660 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 36.0 4.05e-01 80.6% 88.9%
3526182 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.57 40.0 3.90e-01 85.5% 67.1%
3921354 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.56 44.0 4.34e-01 85.5% 87.7%
3300668 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.56 44.0 4.28e-01 88.7% 97.1%
3481948 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.56 45.0 4.41e-01 93.5% 97.1%
3508600 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.55 41.0 4.45e-01 79.0% 100.0%
2595997 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 30.0 2.92e-01 72.6% 43.8%
3881917 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 42.0 3.71e-01 85.5% 56.8%
3509175 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 42.0 3.90e-01 85.5% 67.5%
3479750 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 42.0 4.29e-01 85.5% 95.0%
3845514 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.54 40.0 4.08e-01 79.0% 83.3%
3703034 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 42.0 3.98e-01 87.1% 98.6%
3941015 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.53 40.0 4.24e-01 83.9% 100.0%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 33.0 3.45e-01 72.6% 70.9%
3768081 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.52 42.0 3.93e-01 90.3% 73.8%
4012099 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 39.0 3.70e-01 87.1% 97.5%
3490252 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.51 38.0 3.97e-01 80.6% 100.0%
4955965 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.51 30.0 3.17e-01 72.6% 64.0%
3583925 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.51 38.0 3.36e-01 82.3% 69.5%