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NC_070786.1__YP_010652484.1__PP460_gp074__00170

Bact-Vir

NC_070786.1__YP_010652484.1__PP460_gp074__00170

Identity

Accession:
NC_070786 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-137
PDB
D2 high residues 243-301
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 60.0 4.95e-01 83.1% 47.6%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 59.0 6.23e-01 83.1% 96.0%
7t2rC01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.75 58.0 5.89e-01 84.7% 98.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.75 57.0 4.96e-01 83.1% 56.7%
2imgA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.72 60.0 4.50e-01 94.9% 93.3%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.70 54.0 4.85e-01 83.1% 77.8%
4jmjA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 61.0 4.34e-01 100.0% 89.0%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.70 56.0 4.97e-01 89.8% 62.5%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 59.0 4.23e-01 94.9% 89.9%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.69 53.0 4.60e-01 86.4% 55.7%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.69 52.0 4.40e-01 84.7% 93.4%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.69 51.0 4.83e-01 84.7% 67.6%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.68 51.0 4.70e-01 84.7% 78.0%
2gxaE01 1.10.10.510 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain 0.68 52.0 4.90e-01 86.4% 84.9%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 50.0 4.81e-01 83.1% 73.9%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.64 51.0 4.29e-01 89.8% 94.2%
1iufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 53.0 4.99e-01 98.3% 84.4%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.63 50.0 4.40e-01 88.1% 65.6%
1ku1A01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.63 47.0 4.42e-01 81.4% 86.5%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.62 46.0 4.21e-01 83.1% 61.4%
2raeA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 52.0 4.10e-01 100.0% 77.4%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 49.0 4.09e-01 91.5% 86.2%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 45.0 4.29e-01 81.4% 83.3%
1rdfA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 45.0 4.15e-01 83.1% 88.5%
1hnnA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 50.0 3.35e-01 100.0% 77.8%
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.59 46.0 3.53e-01 86.4% 97.8%
3fbtA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.59 48.0 3.67e-01 91.5% 95.7%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.58 43.0 3.75e-01 83.1% 67.7%
6fucA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.58 46.0 3.42e-01 96.6% 90.2%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 42.0 3.92e-01 83.1% 80.8%
2vliB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 3.59e-01 100.0% 76.3%
1anxA04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.56 40.0 3.80e-01 78.0% 65.3%
3iruA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 40.0 3.73e-01 79.7% 83.3%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 45.0 3.11e-01 94.9% 86.3%
1npdB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 42.0 3.23e-01 83.1% 93.5%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 43.0 3.31e-01 89.8% 98.0%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 2.78e-01 88.1% 87.3%
4hhyC01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.53 39.0 3.14e-01 83.1% 64.9%
1g5cA00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.52 41.0 3.13e-01 94.9% 69.2%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.52 38.0 3.64e-01 84.7% 77.3%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 38.0 2.74e-01 81.4% 72.7%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 36.0 3.56e-01 79.7% 75.8%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4977905 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.87 66.0 6.26e-01 81.4% 68.6%
3987909 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.87 64.0 4.78e-01 81.4% 34.1%
4978898 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 61.0 6.77e-01 81.4% 100.0%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 64.0 6.19e-01 81.4% 76.9%
3326259 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.83 59.0 6.37e-01 76.3% 92.0%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.82 65.0 5.27e-01 84.7% 50.5%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 62.0 6.20e-01 81.4% 83.3%
3315399 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 61.0 6.45e-01 79.7% 98.0%
3955434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 61.0 6.47e-01 79.7% 96.0%
3422646 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 61.0 6.14e-01 81.4% 83.3%
4995581 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.81 62.0 5.19e-01 83.1% 50.0%
3910504 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 6.43e-01 83.1% 94.0%
3454767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 61.0 6.25e-01 81.4% 90.9%
3455407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 60.0 6.24e-01 81.4% 90.9%
5041677 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 66.0 5.38e-01 91.5% 54.5%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 61.0 5.66e-01 83.1% 66.7%
3928087 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.79 64.0 6.07e-01 88.1% 77.1%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 61.0 6.09e-01 83.1% 88.3%
3330562 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 59.0 5.51e-01 81.4% 68.0%
3366917 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.79 59.0 6.07e-01 81.4% 90.9%
3465761 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.78 55.0 4.21e-01 74.6% 83.1%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 60.0 5.82e-01 83.1% 75.4%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.77 59.0 6.06e-01 81.4% 89.1%
3879117 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 57.0 5.89e-01 79.7% 89.1%
4953748 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 61.0 5.64e-01 86.4% 92.0%
3334149 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 57.0 5.91e-01 81.4% 90.9%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 58.0 5.49e-01 81.4% 72.9%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 61.0 5.38e-01 86.4% 87.1%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.76 59.0 6.35e-01 84.7% 100.0%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 57.0 5.83e-01 81.4% 90.9%
3935353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 57.0 5.18e-01 83.1% 60.2%
4997662 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 5.11e-01 91.5% 53.6%
3428283 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 57.0 5.70e-01 81.4% 81.7%
3620979 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 6.06e-01 84.7% 100.0%
3311830 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.75 57.0 4.33e-01 81.4% 83.7%
3740014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 60.0 5.74e-01 88.1% 85.7%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.60e-01 78.0% 85.5%
3203378 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 58.0 5.68e-01 84.7% 81.5%
3487537 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.75e-01 78.0% 90.0%
4952347 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.15e-01 84.7% 96.5%
3793542 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 57.0 5.70e-01 83.1% 88.3%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.74 57.0 4.55e-01 84.7% 43.3%
5006610 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 54.0 5.43e-01 79.7% 78.3%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.73 57.0 5.54e-01 84.7% 76.9%
3417440 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.73 58.0 4.46e-01 88.1% 85.2%
3589089 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.73 58.0 4.81e-01 88.1% 73.3%
3243611 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 5.58e-01 83.1% 94.0%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.72 55.0 5.55e-01 83.1% 83.3%
3618386 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 52.0 5.71e-01 76.3% 100.0%
5021354 101.1.2.619 alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.72 53.0 5.15e-01 79.7% 78.5%
3617137 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 55.0 5.63e-01 83.1% 96.4%
3712226 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.72 55.0 4.68e-01 83.1% 51.6%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 55.0 5.47e-01 84.7% 81.7%
5003693 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 5.21e-01 81.4% 76.9%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 5.38e-01 84.7% 78.5%
3959437 592.2.1.15 alpha arrays › PWI domain-like › YugE-like › YugE-like › Transposase_mut 0.71 59.0 4.55e-01 91.5% 60.0%
3609939 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.71 54.0 4.50e-01 83.1% 47.6%
5008720 101.1.1.548 alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.71 53.0 5.18e-01 81.4% 76.9%
4952808 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.40e-01 81.4% 90.9%
5079851 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.47e-01 84.7% 83.3%
3997947 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 50.0 5.34e-01 76.3% 98.0%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 53.0 5.33e-01 83.1% 86.7%
5007660 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.70 52.0 5.10e-01 81.4% 76.9%
3715279 101.1.1.276 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-bind_6 0.70 54.0 3.88e-01 84.7% 27.8%
3629477 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 5.18e-01 81.4% 86.7%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 5.45e-01 83.1% 89.1%
3517207 4218.1.1.1 alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH 0.69 54.0 4.74e-01 91.5% 56.7%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 5.40e-01 81.4% 92.7%
3574709 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 48.0 4.82e-01 74.6% 80.0%
4966213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 51.0 5.02e-01 81.4% 78.5%
3629063 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.69 59.0 4.04e-01 100.0% 75.5%
3575777 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.68 49.0 5.20e-01 78.0% 100.0%
3621273 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.68 47.0 4.83e-01 72.9% 85.5%
5012117 7523.1.1.11 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › VitK2_biosynth 0.68 60.0 3.80e-01 98.3% 87.2%
3960055 592.1.1.14 alpha arrays › PWI domain-like › PWI domain › PWI domain › Transposase_mut 0.68 55.0 4.31e-01 91.5% 60.8%
3507735 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.67 58.0 4.12e-01 100.0% 89.9%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 4.98e-01 84.7% 76.9%
3958858 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.66 54.0 4.19e-01 91.5% 60.0%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 47.0 4.77e-01 79.7% 81.7%
3798724 1075.1.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.63 52.0 3.50e-01 100.0% 47.3%
4488172 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.49e-01 100.0% 36.2%
3667435 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 3.53e-01 89.8% 45.0%