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NC_070789.1__YP_010652704.1__PP485_gp04__00004
Bact-VirNC_070789.1__YP_010652704.1__PP485_gp04__00004
Identity
- Accession:
- NC_070789 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Taxonomy
TaxID: 2571252
Cluster
View cluster (78 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-207
Domain cluster:
rep: AB044554.1__BAA97847.1__X__00040__D16-168
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 23.0 | 2.72e-01 | 93.5% | 43.8% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.59 | 27.0 | 3.41e-01 | 75.8% | 70.7% |
| 3zieD00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.56 | 24.0 | 3.16e-01 | 89.5% | 72.0% |
D2
medium
residues 248-303
Domain cluster:
rep: MK448722.1__QBX16663.1__Javan269_0022__00022__D214-263
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA03 | 3.30.1120.70 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.69 | 54.0 | 5.60e-01 | 87.5% | 100.0% |
| 1weyA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 52.0 | 4.34e-01 | 100.0% | 80.8% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.65e-01 | 75.0% | 75.6% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.59 | 51.0 | 3.91e-01 | 98.2% | 46.9% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.59 | 49.0 | 4.23e-01 | 98.2% | 87.2% |
| 2bsnA00 | 3.30.420.180 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › CobE/GbiG C-terminal domain | 0.56 | 47.0 | 3.58e-01 | 96.4% | 91.5% |
| 2lkzA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 42.0 | 3.80e-01 | 87.5% | 97.6% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.55 | 38.0 | 3.47e-01 | 73.2% | 69.1% |
| 2pffB05 | 3.30.70.2430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.70e-01 | 78.6% | 100.0% |
| 1h5wB03 | 3.30.1350.20 | Alpha Beta › 2-Layer Sandwich › Crambin › Bacteriophage PHI-29 conector. Domain 3 | 0.52 | 37.0 | 3.97e-01 | 85.7% | 100.0% |
| 6fdyU01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 36.0 | 3.25e-01 | 73.2% | 56.2% |
| 4zdnA02 | 1.10.1240.100 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.51 | 40.0 | 3.41e-01 | 85.7% | 76.6% |
| 7x0fA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 42.0 | 3.26e-01 | 100.0% | 79.1% |
| 3dzaA02 | 6.10.250.2140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 39.0 | 3.83e-01 | 83.9% | 75.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032886 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.80 | 71.0 | 4.52e-01 | 100.0% | 21.9% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.78 | 68.0 | 4.32e-01 | 98.2% | 21.5% |
| 3943006 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.73 | 63.0 | 3.99e-01 | 98.2% | 19.0% |
| 3964357 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.73 | 63.0 | 3.96e-01 | 96.4% | 19.0% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.68 | 59.0 | 3.78e-01 | 100.0% | 20.4% |
| 5009121 | 304.8.1.100 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › UPF0228 | 0.66 | 53.0 | 4.74e-01 | 91.1% | 98.8% |
| 5043707 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.65 | 52.0 | 4.87e-01 | 87.5% | 100.0% |
| 5055828 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.64 | 53.0 | 4.78e-01 | 94.6% | 100.0% |
| 4936603 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.64 | 50.0 | 4.76e-01 | 85.7% | 100.0% |
| 3590909 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.63 | 53.0 | 3.51e-01 | 100.0% | 22.6% |
| 3411656 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 44.0 | 2.48e-01 | 85.7% | 38.9% |
| 3658946 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.55 | 46.0 | 4.12e-01 | 100.0% | 83.5% |
| 3488524 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 3.33e-01 | 100.0% | 58.5% |
D3
medium
residues 385-436
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3triA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.88 | 63.0 | 4.90e-01 | 75.0% | 38.8% |
| 3dfuA02 | 1.10.1040.40 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › | 0.79 | 59.0 | 4.75e-01 | 80.8% | 44.4% |
| 4mtxD00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.75 | 54.0 | 4.40e-01 | 76.9% | 47.4% |
| 2gbbB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.70 | 54.0 | 3.90e-01 | 86.5% | 82.6% |
| 2mr9A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 41.0 | 4.29e-01 | 71.2% | 100.0% |
| 3w04A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 41.0 | 2.65e-01 | 82.7% | 40.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990523 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.89 | 66.0 | 5.20e-01 | 76.9% | 43.2% |
| 4981630 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.83 | 67.0 | 5.58e-01 | 86.5% | 63.5% |
| 3988376 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.82 | 70.0 | 5.75e-01 | 92.3% | 63.3% |
| 3286823 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.82 | 63.0 | 4.65e-01 | 80.8% | 36.7% |
| 4938196 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.82 | 70.0 | 5.44e-01 | 92.3% | 55.2% |
| 3344802 | 6158.1.1.0 ↗ | alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region | 0.80 | 50.0 | 4.59e-01 | 100.0% | 50.8% |
| 5057376 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.80 | 67.0 | 5.66e-01 | 92.3% | 64.7% |
| 5057501 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.78 | 66.0 | 5.34e-01 | 94.2% | 57.0% |
| 1174242 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.78 | 57.0 | 5.44e-01 | 78.8% | 70.5% |
| 3959459 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.78 | 69.0 | 5.19e-01 | 100.0% | 65.6% |
| 5023062 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.77 | 66.0 | 5.18e-01 | 94.2% | 69.5% |
| 3972061 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.76 | 66.0 | 5.22e-01 | 96.2% | 56.2% |
| 3278901 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.72 | 59.0 | 4.54e-01 | 94.2% | 63.2% |
| None | — | 0.62 | 46.0 | 2.73e-01 | 80.8% | 44.7% |