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NC_070789.1__YP_010652737.1__PP485_gp37__00037

Bact-Vir

NC_070789.1__YP_010652737.1__PP485_gp37__00037

Identity

Accession:
NC_070789 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nymphadoravirus› Gordonia_phage_ThankyouJordi

TaxID: 2571252

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-190
PDB
Domain cluster: rep: MK814752.1__QCG77174.1__SEA_LUTUM_17__00017__D46-195
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.75 65.0 6.50e-01 100.0% 90.8%
1ztxE00 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 48.0 5.36e-01 92.2% 90.1%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 45.0 5.24e-01 89.9% 92.4%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 63.0 6.04e-01 100.0% 95.1%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.67 49.0 5.40e-01 91.5% 96.1%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 49.0 5.47e-01 94.6% 99.0%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.64 51.0 5.46e-01 93.0% 97.3%
5jdjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 4.81e-01 95.3% 95.6%
2enyA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 41.0 4.51e-01 95.3% 83.7%
2g1dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 36.0 4.09e-01 77.5% 75.5%
2dkuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 4.55e-01 96.9% 93.3%
2x3aA01 2.60.40.2970 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 50.0 5.11e-01 93.0% 89.8%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.59 52.0 5.24e-01 100.0% 93.1%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 4.74e-01 95.3% 94.4%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 29.0 3.13e-01 91.5% 54.3%
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.58 43.0 4.65e-01 100.0% 92.7%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.84e-01 92.2% 96.4%
2gysA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.62e-01 99.2% 95.1%
2lu7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 4.14e-01 100.0% 92.7%
1h6eA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.57 44.0 4.81e-01 91.5% 100.0%
3fcsA02 2.60.40.1460 Mainly Beta › Sandwich › Immunoglobulin-like › Integrin domains. Chain A, domain 2 0.56 49.0 4.62e-01 95.3% 94.2%
4je0B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 51.0 4.82e-01 98.4% 92.1%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 51.0 4.82e-01 99.2% 92.1%
4b60A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 50.0 4.85e-01 98.4% 93.7%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.84e-01 100.0% 93.9%
6ea2A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.55 50.0 4.36e-01 97.7% 96.8%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 4.37e-01 83.7% 97.9%
1r17B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 49.0 4.55e-01 99.2% 86.4%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 4.55e-01 93.8% 94.9%
2yd9A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 4.08e-01 96.9% 95.4%
1ayoA00 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.53 48.0 4.82e-01 99.2% 97.7%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 4.53e-01 96.9% 100.0%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.92e-01 94.6% 71.8%
3km3B00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.51 43.0 4.07e-01 92.2% 94.9%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.38e-01 93.8% 95.9%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.16e-01 99.2% 97.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284835 11.4.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.75 66.0 6.61e-01 99.2% 93.1%
5004124 11.4.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.75 67.0 6.67e-01 100.0% 92.5%
4030879 11.4.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.73 68.0 6.54e-01 100.0% 91.0%
4950703 11.4.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) 0.72 66.0 6.26e-01 100.0% 94.0%
4568023 11.4.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.71 66.0 6.51e-01 100.0% 94.8%
3237970 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 52.0 5.33e-01 93.0% 79.2%
3970688 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 50.0 5.53e-01 86.8% 97.0%
5014676 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 43.0 5.12e-01 89.9% 97.6%
5036976 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 55.0 5.72e-01 96.9% 95.0%
4960416 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 43.0 4.96e-01 88.4% 97.8%
3256415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 43.0 4.87e-01 89.9% 92.6%
3254117 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.64 54.0 5.64e-01 100.0% 97.5%
4941197 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 5.05e-01 95.3% 73.1%
5010445 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.67e-01 94.6% 72.9%
4942867 11.4.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) 0.60 55.0 5.21e-01 98.4% 89.3%
3330525 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 53.0 5.02e-01 95.3% 87.0%
3499232 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 38.0 3.17e-01 83.7% 37.3%
5024961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 4.94e-01 93.8% 93.9%
3837825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 53.0 4.96e-01 95.3% 89.6%
2417793 11.1.1.182 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.59 51.0 5.01e-01 92.2% 87.6%
3205720 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 5.08e-01 93.8% 95.6%
4115592 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 51.0 5.06e-01 94.6% 97.0%
4959957 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.83e-01 96.9% 85.9%
3314582 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.58 52.0 4.59e-01 95.3% 80.6%
4446208 11.1.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.58 50.0 5.07e-01 100.0% 93.1%
5062273 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.58 50.0 5.04e-01 93.8% 99.2%
3763834 11.1.1.819 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PTHB1_GAE 0.58 48.0 4.94e-01 93.8% 92.8%
3596527 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 53.0 4.62e-01 100.0% 79.3%
3336425 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.86e-01 91.5% 100.0%
3605497 11.1.1.416 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.57 50.0 4.66e-01 96.1% 94.5%
4956297 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 51.0 5.06e-01 97.7% 96.3%
5030001 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.73e-01 93.8% 96.5%
4027710 11.1.1.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.56 47.0 4.34e-01 93.0% 70.3%
4562028 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.56 41.0 3.96e-01 87.6% 67.6%
4873643 11.1.5.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 0.56 51.0 4.78e-01 99.2% 91.6%
3831628 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.70e-01 94.6% 91.7%
3442957 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.58e-01 90.7% 100.0%
4958132 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.43e-01 95.3% 83.1%
3506640 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.47e-01 88.4% 85.4%
4946917 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 42.0 4.41e-01 88.4% 88.3%
3934566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 49.0 4.72e-01 99.2% 94.7%
4130905 11.1.5.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 0.55 50.0 4.62e-01 99.2% 86.3%
3716385 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 49.0 4.78e-01 99.2% 92.1%
4265804 11.1.5.89 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 0.54 48.0 4.47e-01 100.0% 92.7%
3218040 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.57e-01 94.6% 93.6%
3216105 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.53 39.0 4.10e-01 76.0% 100.0%
3269734 11.1.5.62 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.53 42.0 4.40e-01 85.3% 100.0%
3490005 11.1.1.804 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 0.52 47.0 4.23e-01 100.0% 86.7%
3720715 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 46.0 4.29e-01 98.4% 96.9%
3433610 11.1.5.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TPD1_C 0.52 39.0 4.13e-01 92.2% 90.4%
3254718 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.37e-01 95.3% 94.5%
3699878 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.51 41.0 4.24e-01 87.6% 100.0%
4945417 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.33e-01 93.8% 91.1%