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NC_070791.1__YP_010652908.1__PP487_gp43__00043

Bact-Vir

NC_070791.1__YP_010652908.1__PP487_gp43__00043

Identity

Accession:
NC_070791 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nymphadoravirus› Gordonia_phage_Herod

TaxID: 2776861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-97
PDB
Domain cluster: rep: OP125547.1__UVD32052.1__vBKpnPKlyazma_orf057__00057__D242-336
D2 high residues 114-266
PDB
Domain cluster: rep: HQ634187.1__AGH57655.1__CPKG_00024__00024__D94-222_230-236
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 36.0 4.61e-01 83.7% 93.9%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 39.0 4.65e-01 85.0% 87.5%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 5.04e-01 100.0% 88.7%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 38.0 4.51e-01 86.3% 94.1%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 33.0 4.10e-01 81.7% 88.7%
1fy7A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 27.0 2.89e-01 97.4% 50.7%
1tkkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 37.0 4.20e-01 80.4% 93.9%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 37.0 4.14e-01 81.0% 94.0%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 24.0 3.09e-01 93.5% 73.8%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 37.0 4.19e-01 77.1% 98.2%
3dg6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 37.0 4.16e-01 76.5% 98.2%
2pgwA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 38.0 3.87e-01 77.8% 88.7%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.99e-01 75.8% 93.0%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.73e-01 75.8% 84.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5019745 2.1.1.383 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30888 0.75 66.0 6.84e-01 100.0% 96.6%
3248985 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 53.0 5.68e-01 97.4% 85.4%
3542604 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.67 48.0 5.05e-01 100.0% 82.2%
3269184 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 40.0 4.88e-01 83.7% 98.9%
3291641 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 38.0 4.58e-01 85.0% 94.7%
3720086 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.58e-01 100.0% 71.8%
3680238 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 54.0 5.21e-01 100.0% 86.3%
3786205 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 51.0 5.31e-01 100.0% 99.3%
3443786 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 25.0 3.39e-01 79.1% 85.3%
3444419 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 27.0 3.23e-01 73.2% 75.0%
3790600 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.51 28.0 2.77e-01 97.4% 47.9%
4030444 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 26.0 3.03e-01 95.4% 66.4%
4320111 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.51 32.0 3.82e-01 96.1% 96.0%