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NC_070795.1__YP_010653267.1__PP491_gp74__00074

Bact-Vir

NC_070795.1__YP_010653267.1__PP491_gp74__00074

Identity

Accession:
NC_070795 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nymphadoravirus› Gordonia_phage_BoyNamedSue

TaxID: 2836009

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-97
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.40e-01 100.0% 81.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.40e-01 100.0% 82.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.74e-01 100.0% 98.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.44e-01 100.0% 84.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.68 53.0 5.30e-01 100.0% 82.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.22e-01 100.0% 93.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.02e-01 100.0% 78.4%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 44.0 4.39e-01 83.3% 68.6%
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 56.0 4.28e-01 100.0% 70.3%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.36e-01 100.0% 55.6%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 37.0 4.12e-01 87.9% 86.7%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 47.0 4.06e-01 84.8% 82.1%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 53.0 5.16e-01 98.5% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.46e-01 100.0% 79.7%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 47.0 3.88e-01 86.4% 76.1%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 48.0 4.73e-01 89.4% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 38.0 3.98e-01 93.9% 77.0%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.56 45.0 4.37e-01 89.4% 95.9%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 4.38e-01 92.4% 86.4%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.42e-01 86.4% 93.5%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.70e-01 93.9% 68.7%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.55 48.0 3.87e-01 100.0% 63.6%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 2.91e-01 100.0% 36.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.79e-01 93.9% 86.3%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 40.0 4.08e-01 90.9% 83.3%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.54 43.0 3.47e-01 90.9% 51.8%
6gmhI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 37.0 3.73e-01 75.8% 82.6%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.53 32.0 3.32e-01 75.8% 64.4%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.53 43.0 3.22e-01 97.0% 97.9%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 36.0 3.76e-01 95.5% 80.3%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.52 38.0 3.50e-01 84.8% 91.0%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.78e-01 100.0% 81.8%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 35.0 2.58e-01 75.8% 60.0%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.69e-01 93.9% 79.7%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 3.44e-01 95.5% 80.7%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 44.0 2.99e-01 100.0% 55.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3246086 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.00e-01 100.0% 55.8%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 55.0 5.72e-01 100.0% 85.0%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.73e-01 100.0% 81.5%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.73 54.0 5.49e-01 100.0% 80.0%
3910727 4.1.1.353 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.73 54.0 5.52e-01 100.0% 81.5%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.60e-01 100.0% 86.7%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 54.0 5.02e-01 100.0% 67.5%
4284118 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 4.93e-01 95.5% 70.7%
4018213 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 56.0 4.39e-01 100.0% 43.4%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 53.0 5.60e-01 98.5% 98.3%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 54.0 4.10e-01 100.0% 40.7%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.96e-01 100.0% 73.8%
3661025 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.64 54.0 4.49e-01 100.0% 53.9%
3770399 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.63 51.0 4.31e-01 100.0% 52.7%
3912726 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 52.0 5.17e-01 98.5% 85.7%
3598074 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 50.0 4.37e-01 89.4% 72.4%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 52.0 4.75e-01 100.0% 69.4%
3497168 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.63 51.0 4.27e-01 100.0% 52.7%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.63 53.0 4.55e-01 100.0% 60.0%
2556671 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.63 43.0 4.44e-01 72.7% 82.0%
1826911 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 53.0 4.80e-01 100.0% 70.1%
3470133 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 52.0 4.37e-01 100.0% 54.4%
3965386 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.60 44.0 3.72e-01 93.9% 44.9%
4027694 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 31.0 3.58e-01 81.8% 71.1%
5024339 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.59 46.0 3.95e-01 89.4% 66.1%
3539840 2.1.1.188 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.59 48.0 4.44e-01 90.9% 98.8%
3230400 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 5.01e-01 100.0% 95.4%
3229356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 4.48e-01 100.0% 64.8%
3634475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 5.13e-01 100.0% 92.9%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 32.0 3.65e-01 95.5% 75.6%
4942967 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 3.82e-01 90.9% 83.1%
5011572 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.57 46.0 3.96e-01 90.9% 70.0%
3524130 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 45.0 3.85e-01 100.0% 52.7%
3387114 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.56 45.0 4.04e-01 95.5% 62.1%
3390005 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 46.0 3.74e-01 93.9% 69.6%
3570970 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 45.0 3.29e-01 93.9% 57.6%
4856681 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.55 46.0 3.85e-01 97.0% 64.8%
5000498 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.55 41.0 4.29e-01 90.9% 91.7%
3947541 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 35.0 3.83e-01 87.9% 90.0%
3697318 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.17e-01 100.0% 82.2%
5061635 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 33.0 1.95e-01 81.8% 7.2%
3493244 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 41.0 2.71e-01 89.4% 37.9%
3225764 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.52 38.0 3.99e-01 77.3% 96.7%
3248797 11.1.1.867 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_1st 0.52 39.0 3.57e-01 80.3% 81.2%
4514021 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.51 44.0 3.96e-01 100.0% 87.4%
3643227 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.51 42.0 3.36e-01 95.5% 68.0%
4959982 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.51 42.0 3.05e-01 95.5% 36.1%
5041408 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 3.09e-01 93.9% 42.7%
5055065 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 3.45e-01 75.8% 89.3%