←Back to structures

NC_070803.1__YP_010653819.1__PP499_gp30__00030

Bact-Vir

NC_070803.1__YP_010653819.1__PP499_gp30__00030

Identity

Accession:
NC_070803 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Attisvirus› Gordonia_phage_Bjanes7

TaxID: 2047832

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 103-168
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3697890 7516.1.1.67 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug 0.57 44.0 2.84e-01 86.4% 23.3%
D2 medium residues 27-89
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.69 55.0 5.26e-01 87.3% 90.3%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.66 51.0 4.51e-01 87.3% 69.1%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 45.0 3.63e-01 77.8% 54.5%
3snyA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.59 39.0 3.51e-01 81.0% 48.3%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.58 39.0 3.27e-01 76.2% 40.4%
2h6uA00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.58 43.0 3.57e-01 81.0% 44.7%
2qcsB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 40.0 3.24e-01 76.2% 37.6%
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.57 50.0 4.26e-01 100.0% 76.2%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.57 42.0 4.26e-01 79.4% 85.7%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.63e-01 77.8% 59.1%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.60e-01 76.2% 59.0%
3zjbA00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.55 40.0 2.98e-01 79.4% 43.0%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.31e-01 81.0% 50.6%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.47e-01 79.4% 65.0%
6udkD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.12e-01 77.8% 54.6%
3cw3A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.53 38.0 3.38e-01 76.2% 61.3%
4dsqA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 2.94e-01 81.0% 62.1%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 2.85e-01 77.8% 30.9%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 43.0 3.38e-01 98.4% 69.6%
1hxmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.15e-01 79.4% 55.4%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 39.0 3.89e-01 100.0% 83.3%
1yhpA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 36.0 3.26e-01 82.5% 51.1%
2hdeA01 3.10.20.550 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit 0.52 36.0 3.04e-01 76.2% 45.5%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.07e-01 76.2% 64.3%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 38.0 2.85e-01 84.1% 69.1%
3u07A02 2.60.120.1600 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 3.01e-01 77.8% 61.2%
1n10A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.50 40.0 3.33e-01 87.3% 79.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046788 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 57.0 4.64e-01 98.4% 54.2%
4961820 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.62 45.0 4.66e-01 84.1% 83.3%
3754872 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.62 44.0 3.60e-01 76.2% 47.5%
3224158 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.60 38.0 3.52e-01 81.0% 47.1%
3768710 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.19e-01 76.2% 54.1%
4534824 382.1.1.7 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type 0.57 41.0 3.81e-01 100.0% 60.0%
4380363 382.1.1.7 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type 0.56 43.0 4.34e-01 98.4% 88.9%
4375915 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.56 41.0 3.62e-01 81.0% 76.0%
4919518 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.55 38.0 3.45e-01 74.6% 73.7%
3579209 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 45.0 3.78e-01 98.4% 89.2%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.73e-01 76.2% 92.9%
4587008 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.53 38.0 3.31e-01 79.4% 65.5%
4605147 377.4.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 0.53 45.0 3.34e-01 100.0% 89.8%
4669194 377.4.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 0.53 44.0 3.29e-01 96.8% 91.8%
4598948 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 39.0 3.96e-01 100.0% 84.6%
3775096 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.52 44.0 4.00e-01 98.4% 78.9%
4469156 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.52 44.0 3.41e-01 100.0% 71.0%
5037226 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.46e-01 81.0% 65.6%
3593924 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.52 37.0 3.08e-01 77.8% 54.2%
4304232 377.4.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 0.51 43.0 3.17e-01 100.0% 88.6%
4940880 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 38.0 3.34e-01 81.0% 56.0%
3517479 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 36.0 3.25e-01 100.0% 50.0%
1296875 382.1.1.7 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type 0.51 43.0 4.18e-01 98.4% 86.1%
3464620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.50e-01 74.6% 93.8%
4401973 382.1.1.7 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type 0.50 41.0 3.93e-01 98.4% 79.7%