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NC_070808.1__YP_010654211.1__PP504_gp44__00044

Bact-Vir

NC_070808.1__YP_010654211.1__PP504_gp44__00044

Identity

Accession:
NC_070808 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Beenievirus› Gordonia_phage_Dolores

TaxID: 2873534

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-86
PDB
Domain cluster: rep: KU963263.1__AMS03853.1__SEA_BAXTERFOX_43__00044__D33-101
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 58.0 5.87e-01 100.0% 81.0%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 55.0 5.99e-01 98.8% 92.4%
2wusS00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 61.0 6.09e-01 100.0% 84.1%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 56.0 5.19e-01 98.8% 61.2%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 60.0 6.29e-01 98.8% 95.9%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 54.0 5.73e-01 100.0% 87.1%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 55.0 5.85e-01 100.0% 91.3%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 54.0 5.89e-01 98.8% 96.8%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 35.0 4.48e-01 97.5% 78.7%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 52.0 5.53e-01 98.8% 87.0%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 61.0 5.81e-01 100.0% 78.5%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 36.0 3.81e-01 98.8% 53.5%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 35.0 4.47e-01 98.8% 79.2%
3qf3D00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 60.0 5.15e-01 98.8% 57.8%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 51.0 5.49e-01 100.0% 90.9%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 51.0 4.97e-01 98.8% 70.0%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 48.0 5.06e-01 95.1% 80.8%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 5.27e-01 98.8% 93.9%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 47.0 5.22e-01 100.0% 98.3%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 52.0 5.07e-01 100.0% 75.3%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 46.0 4.42e-01 88.9% 60.6%
7zcvA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 49.0 5.42e-01 98.8% 98.4%
4jcyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 51.0 4.90e-01 98.8% 71.7%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 49.0 5.26e-01 100.0% 95.5%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 48.0 4.87e-01 98.8% 78.0%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 48.0 4.77e-01 100.0% 77.0%
1rktA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 33.0 3.90e-01 98.8% 75.5%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 46.0 4.73e-01 98.8% 86.8%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 39.0 4.01e-01 82.7% 71.4%
6n8eA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.59 47.0 3.43e-01 92.6% 80.4%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 42.0 3.89e-01 76.5% 81.1%
1oohA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.58 44.0 3.89e-01 84.0% 87.3%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 48.0 4.81e-01 100.0% 90.6%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 40.0 3.85e-01 72.8% 79.3%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.57 36.0 4.13e-01 95.1% 86.7%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 35.0 3.54e-01 87.7% 63.3%
1neqA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 40.0 4.19e-01 98.8% 85.1%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 40.0 3.78e-01 76.5% 79.8%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.54 34.0 3.87e-01 95.1% 82.5%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.54 36.0 4.03e-01 95.1% 87.3%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 43.0 3.79e-01 88.9% 65.9%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 40.0 3.67e-01 85.2% 83.0%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 39.0 3.42e-01 85.2% 82.6%
1o3uA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 40.0 3.58e-01 87.7% 70.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030212 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.81 60.0 6.42e-01 100.0% 91.4%
3954613 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 58.0 5.02e-01 100.0% 50.4%
4632225 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.78 58.0 5.72e-01 100.0% 74.1%
3947329 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.78 57.0 6.18e-01 100.0% 95.4%
4335698 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 57.0 5.52e-01 100.0% 70.0%
3280943 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.77 55.0 6.05e-01 100.0% 93.8%
3587619 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 57.0 6.03e-01 98.8% 90.0%
3989752 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 57.0 5.93e-01 100.0% 85.3%
5003089 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 55.0 5.85e-01 98.8% 88.6%
1181610 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 55.0 5.82e-01 100.0% 90.0%
3944622 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 55.0 5.55e-01 100.0% 80.0%
3277880 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 52.0 5.44e-01 98.8% 81.3%
3590480 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.73 52.0 4.76e-01 100.0% 57.1%
3288847 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.72 53.0 5.53e-01 100.0% 85.3%
5083592 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.72 49.0 5.41e-01 100.0% 89.2%
5039762 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.71 52.0 5.02e-01 100.0% 67.4%
4966173 101.1.4.97 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DrmE_C 0.69 56.0 4.87e-01 100.0% 58.4%
2773 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 48.0 4.94e-01 100.0% 77.9%
381796 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.68 49.0 4.23e-01 98.8% 47.3%
3277653 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.68 52.0 5.13e-01 100.0% 78.8%
317430 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 48.0 5.18e-01 100.0% 95.5%
3588180 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 49.0 4.70e-01 100.0% 68.4%
3288109 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 47.0 4.99e-01 100.0% 92.9%
5000182 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 44.0 4.10e-01 77.8% 79.0%
3963750 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 47.0 4.80e-01 98.8% 87.5%
4970900 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.59 46.0 4.54e-01 87.7% 86.7%
3230818 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 39.0 4.03e-01 90.1% 73.3%
3507798 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 38.0 4.22e-01 98.8% 84.6%
3504908 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.55 42.0 3.94e-01 82.7% 88.0%
3890040 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 40.0 3.37e-01 77.8% 58.6%
4098537 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.55 43.0 3.72e-01 86.4% 66.9%
3700903 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 39.0 3.44e-01 76.5% 60.8%
4097048 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.53 41.0 3.04e-01 85.2% 38.3%
5028565 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.53 38.0 3.75e-01 77.8% 97.8%
3655226 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 38.0 3.34e-01 77.8% 61.5%
3805676 1128.1.1.13 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 0.53 35.0 3.48e-01 88.9% 62.2%
3703267 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 39.0 3.43e-01 77.8% 70.8%
5061156 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 41.0 3.60e-01 85.2% 84.2%
3707503 101.1.10.20 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 0.51 39.0 3.41e-01 81.5% 89.6%
3516301 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.50 34.0 3.24e-01 100.0% 55.2%