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NC_070809.1__YP_010654286.1__PP505_gp39__00039

Bact-Vir

NC_070809.1__YP_010654286.1__PP505_gp39__00039

Identity

Accession:
NC_070809 ↗
Kingdom:
phage

Quality

55.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Beenievirus› Gordonia_phage_Dorito

TaxID: 2499023

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-112
PDB
Domain cluster: rep: MW584179.1__QSM03547.1__PROPHIGD43A-1_8__00008__D67-134
D2 high residues 148-217
PDB
D3 high residues 286-388
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 37.0 4.23e-01 73.8% 72.4%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.64 39.0 4.03e-01 76.7% 63.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 36.0 3.49e-01 100.0% 50.8%
1an9A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.60 42.0 3.80e-01 97.1% 52.5%
1wjmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 3.93e-01 71.8% 73.2%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 4.12e-01 71.8% 75.0%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 34.0 3.44e-01 79.6% 54.2%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 4.16e-01 91.3% 70.7%
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 4.12e-01 74.8% 74.3%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 41.0 4.22e-01 95.1% 82.3%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.79e-01 71.8% 78.8%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.53e-01 71.8% 65.0%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.66e-01 71.8% 85.4%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.74e-01 71.8% 73.4%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 38.0 2.92e-01 71.8% 82.9%
1emsA02 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 37.0 3.47e-01 72.8% 56.9%
4r70B01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 38.0 3.09e-01 94.2% 37.9%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.61e-01 74.8% 70.4%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.53 41.0 3.65e-01 83.5% 77.0%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 41.0 3.76e-01 83.5% 68.6%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 43.0 3.94e-01 88.3% 89.7%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 4.09e-01 83.5% 95.1%
3nhqC03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 36.0 3.30e-01 73.8% 58.0%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 39.0 3.76e-01 82.5% 78.9%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 40.0 3.16e-01 85.4% 64.6%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.51 37.0 4.07e-01 96.1% 97.6%
3agdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 39.0 2.84e-01 83.5% 78.0%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.50 37.0 3.44e-01 100.0% 61.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4342847 323.1.1.25 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › SIDD_N 0.60 44.0 3.61e-01 76.7% 79.5%
4949986 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.60 42.0 4.14e-01 72.8% 75.5%
4984971 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.60 36.0 4.30e-01 91.3% 90.0%
3240374 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 41.0 2.88e-01 74.8% 95.7%
5065544 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.57 44.0 3.77e-01 81.6% 97.0%
5076068 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.57 41.0 4.15e-01 75.7% 78.1%
5073557 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.45e-01 71.8% 58.6%
3955512 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.55 46.0 4.39e-01 92.2% 85.0%
4927268 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.55 41.0 4.52e-01 99.0% 100.0%
5046979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.72e-01 71.8% 66.4%
3584302 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.55 43.0 3.45e-01 83.5% 71.0%
5077119 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.50e-01 75.7% 54.0%
5074455 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 3.67e-01 71.8% 66.4%
3907293 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 37.0 3.75e-01 71.8% 74.3%
3497850 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.29e-01 74.8% 46.7%
3390111 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.54 37.0 4.00e-01 71.8% 83.3%
3544563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.80e-01 72.8% 75.2%
5074857 223.2.1.59 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Roc 0.53 38.0 2.78e-01 76.7% 25.2%
5046813 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 37.0 3.60e-01 72.8% 72.2%
4971503 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 37.0 3.45e-01 72.8% 64.1%
5071765 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.56e-01 74.8% 61.6%
4972248 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.40e-01 72.8% 64.6%
5051010 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 3.56e-01 72.8% 67.3%
5079671 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 3.57e-01 75.7% 67.3%
5072591 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.65e-01 75.7% 67.8%
4947581 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 37.0 3.69e-01 74.8% 70.9%
5001318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 35.0 3.52e-01 74.8% 67.3%
5045350 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 4.21e-01 100.0% 93.1%
4999058 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 35.0 3.70e-01 71.8% 82.1%
3597783 304.55.2.8 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.51 41.0 4.08e-01 100.0% 86.7%
5078530 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 3.54e-01 73.8% 70.5%
3202693 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.50 44.0 3.74e-01 99.0% 95.4%
5071005 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 4.11e-01 98.1% 91.5%