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NC_070816.1__YP_010654826.1__PP512_gp43__00043
Bact-VirNC_070816.1__YP_010654826.1__PP512_gp43__00043
Identity
- Accession:
- NC_070816 ↗
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Taxonomy
TaxID: 2652879
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-59
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.83 | 70.0 | 5.34e-01 | 100.0% | 41.3% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.80 | 68.0 | 4.99e-01 | 100.0% | 37.1% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 64.0 | 5.07e-01 | 100.0% | 46.0% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.67 | 59.0 | 5.52e-01 | 100.0% | 81.4% |
| 3lkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 50.0 | 3.27e-01 | 96.4% | 86.9% |
| 2x51A06 | 3.30.70.1590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 47.0 | 4.54e-01 | 100.0% | 95.5% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.55 | 44.0 | 3.90e-01 | 98.2% | 67.4% |
| 1z6tA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 3.87e-01 | 94.6% | 60.0% |
| 4byfA01 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 45.0 | 4.00e-01 | 100.0% | 76.7% |
| 4ig1A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.54 | 41.0 | 2.58e-01 | 85.7% | 47.9% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.73e-01 | 100.0% | 52.9% |
| 2ly1A01 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.54 | 40.0 | 3.66e-01 | 83.9% | 63.3% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.80e-01 | 94.6% | 63.5% |
| 3euhC02 | 1.10.10.2260 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain | 0.53 | 43.0 | 3.66e-01 | 100.0% | 70.4% |
| 5fo5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.82e-01 | 94.6% | 64.8% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 3.21e-01 | 94.6% | 37.0% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.77e-01 | 94.6% | 64.0% |
| 6teyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.97e-01 | 94.6% | 75.3% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 4.02e-01 | 94.6% | 72.2% |
| 4ohxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.61e-01 | 80.4% | 42.5% |
| 5hmpB02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 42.0 | 4.10e-01 | 100.0% | 90.6% |
| 3lmmC04 | 1.10.10.2340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 39.0 | 3.46e-01 | 83.9% | 57.5% |
| 5i0hA02 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 44.0 | 4.14e-01 | 100.0% | 91.7% |
| 3szpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 3.82e-01 | 100.0% | 71.9% |
| 6g1dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.80e-01 | 100.0% | 74.4% |
| 1b25A03 | 1.10.599.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 | 0.50 | 42.0 | 2.91e-01 | 100.0% | 25.8% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.06e-01 | 94.6% | 38.8% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.25e-01 | 89.3% | 50.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3960483 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.80 | 62.0 | 6.47e-01 | 100.0% | 96.0% |
| 3533687 | 101.1.2.167 ↗ | alpha arrays › HTH › HTH › winged helix domain › XRN1_D2_D3 | 0.78 | 69.0 | 5.20e-01 | 100.0% | 60.0% |
| 4950846 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.77 | 61.0 | 6.35e-01 | 100.0% | 98.0% |
| 3962178 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 60.0 | 4.76e-01 | 100.0% | 58.3% |
| 3965196 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.68 | 55.0 | 5.41e-01 | 100.0% | 88.3% |
| 3587522 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 55.0 | 5.22e-01 | 100.0% | 75.7% |
| 4031520 | 101.1.9.64 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_23 | 0.66 | 55.0 | 5.33e-01 | 100.0% | 89.2% |
| 4032183 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.58 | 44.0 | 3.93e-01 | 82.1% | 77.5% |
| 3628456 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 30.0 | 2.35e-01 | 100.0% | 20.3% |
| 4420420 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 46.0 | 4.04e-01 | 94.6% | 60.0% |
| 3289939 | 2003.1.2.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.57 | 48.0 | 3.16e-01 | 100.0% | 23.6% |
| 4588125 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.56 | 41.0 | 3.74e-01 | 82.1% | 77.5% |
| 4679870 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 3.92e-01 | 94.6% | 56.8% |
| 3986748 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.55 | 39.0 | 3.50e-01 | 78.6% | 64.4% |
| 3284225 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.55 | 44.0 | 4.02e-01 | 94.6% | 71.2% |
| 3272721 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 45.0 | 3.63e-01 | 100.0% | 57.6% |
| 4107841 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.55 | 43.0 | 3.85e-01 | 94.6% | 60.0% |
| 3805792 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.54 | 38.0 | 3.52e-01 | 78.6% | 58.7% |
| 4571259 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.54 | 43.0 | 3.81e-01 | 94.6% | 61.1% |
| 4672682 | 101.1.2.27 ↗ | alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind | 0.54 | 43.0 | 3.67e-01 | 94.6% | 55.0% |
| 3406381 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 46.0 | 3.17e-01 | 100.0% | 28.1% |
| 4058875 | 102.1.1.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 | 0.54 | 45.0 | 3.22e-01 | 100.0% | 37.8% |
| 5023893 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.53 | 43.0 | 2.94e-01 | 98.2% | 23.0% |
| 3210018 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 44.0 | 3.73e-01 | 100.0% | 54.3% |
| 4468068 | 101.1.2.46 ↗ | alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg | 0.53 | 42.0 | 3.63e-01 | 94.6% | 55.0% |
| 4988782 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.53 | 40.0 | 3.42e-01 | 89.3% | 47.6% |
| 4254926 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.91e-01 | 94.6% | 73.3% |
| 4596757 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.53 | 43.0 | 3.71e-01 | 100.0% | 63.0% |
| 4129764 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.52 | 41.0 | 3.79e-01 | 94.6% | 68.8% |
| 4064401 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.52 | 36.0 | 2.49e-01 | 94.6% | 18.8% |
| 3970719 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 44.0 | 3.98e-01 | 100.0% | 75.0% |
| 3973486 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.52 | 43.0 | 3.80e-01 | 100.0% | 66.7% |
| 4930015 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 3.49e-01 | 100.0% | 49.6% |
| 3946198 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 42.0 | 3.72e-01 | 94.6% | 67.1% |
| 143631 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 42.0 | 3.25e-01 | 100.0% | 39.7% |
| 4933514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.31e-01 | 100.0% | 72.9% |
| 3973326 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 43.0 | 3.79e-01 | 100.0% | 66.7% |
| 3967340 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 41.0 | 3.62e-01 | 94.6% | 63.3% |
| 3981080 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 42.0 | 3.78e-01 | 100.0% | 70.6% |
| 4031672 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 43.0 | 3.93e-01 | 100.0% | 76.2% |
| 3279636 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.50 | 43.0 | 3.76e-01 | 100.0% | 67.8% |
| 4950772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 41.0 | 3.55e-01 | 100.0% | 58.0% |
| 3967891 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.50 | 42.0 | 3.69e-01 | 94.6% | 70.6% |
| 4004508 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.50 | 43.0 | 3.88e-01 | 100.0% | 76.2% |
| 3969385 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 43.0 | 3.87e-01 | 100.0% | 76.2% |
| 3969371 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 42.0 | 3.69e-01 | 100.0% | 66.7% |