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NC_070817.1__YP_010654916.1__PP513_gp55__00055

Bact-Vir

NC_070817.1__YP_010654916.1__PP513_gp55__00055

Identity

Accession:
NC_070817 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Howevirus› Gordonia_phage_Howe

TaxID: 1777061

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-80
PDB
Domain cluster: rep: MW584183.1__QST89833.1__PROPHIGD53-3_30__00029__DFULL
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.71 42.0 4.41e-01 72.5% 65.3%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.61 45.0 4.23e-01 77.5% 97.9%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.46e-01 72.5% 97.9%
4ruwA01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 36.0 2.59e-01 75.0% 83.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944275 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 44.0 4.72e-01 72.5% 70.0%
3830987 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.68 41.0 4.49e-01 73.8% 73.8%
3934826 207.1.1.45 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4,LRR_8 0.62 44.0 2.87e-01 73.8% 27.2%
3351761 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.60 45.0 4.27e-01 78.8% 92.6%
3662203 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.60 44.0 4.36e-01 77.5% 97.6%
3803385 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 40.0 4.02e-01 72.5% 76.2%
3461511 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.56 37.0 3.17e-01 72.5% 40.8%
3210923 2.1.1.296 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7476 0.56 31.0 2.96e-01 75.0% 43.0%
3822097 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.52 37.0 3.08e-01 76.2% 41.9%