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NC_070817.1__YP_010654930.1__PP513_gp69__00069
Bact-VirNC_070817.1__YP_010654930.1__PP513_gp69__00069
Identity
- Accession:
- NC_070817 ↗
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 158-236
Domain cluster:
rep: IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004536__D167-258
D2
high
residues 244-309
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pyfA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 40.0 | 3.14e-01 | 74.2% | 32.7% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.57 | 49.0 | 3.83e-01 | 100.0% | 89.8% |
| 1hdhA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.55 | 44.0 | 2.71e-01 | 90.9% | 67.9% |
| 6pnjL00 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.54 | 38.0 | 2.98e-01 | 75.8% | 52.6% |
| 2cq8A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 40.0 | 3.76e-01 | 80.3% | 100.0% |
| 1p8aA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 42.0 | 3.39e-01 | 92.4% | 97.3% |
| 4nn5A00 | 1.20.1250.90 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Thymic stromal lymphopoietin | 0.52 | 38.0 | 3.23e-01 | 77.3% | 51.4% |
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.52 | 44.0 | 3.85e-01 | 92.4% | 84.2% |
| 4hasA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 45.0 | 3.93e-01 | 98.5% | 94.2% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.52 | 42.0 | 3.22e-01 | 100.0% | 60.2% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 41.0 | 3.46e-01 | 92.4% | 51.4% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 45.0 | 3.24e-01 | 100.0% | 100.0% |
| 4o2zA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 3.05e-01 | 84.8% | 79.7% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 39.0 | 3.49e-01 | 89.4% | 75.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4061482 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.72 | 50.0 | 3.42e-01 | 72.7% | 67.7% |
| 4022918 | 1015.1.1.0 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs | 0.64 | 51.0 | 3.73e-01 | 89.4% | 53.5% |
| 4007500 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.60 | 45.0 | 3.07e-01 | 81.8% | 91.5% |
| 4519029 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.60 | 42.0 | 2.79e-01 | 74.2% | 54.8% |
| 3687615 | 109.24.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 | 0.58 | 40.0 | 3.51e-01 | 92.4% | 50.5% |
| 4468656 | 7510.1.1.0 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like | 0.56 | 44.0 | 3.62e-01 | 86.4% | 74.4% |
| 3304245 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.56 | 36.0 | 2.69e-01 | 98.5% | 22.7% |
| 3882598 | 2004.1.1.635 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12, AAA_33 | 0.56 | 40.0 | 2.85e-01 | 77.3% | 51.8% |
| 3911582 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.54 | 42.0 | 3.26e-01 | 84.8% | 81.3% |
| 3397264 | 4193.1.1.0 ↗ | alpha arrays › RUN domain › RUN domain › RUN domain | 0.54 | 47.0 | 3.52e-01 | 98.5% | 81.2% |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 46.0 | 3.75e-01 | 98.5% | 87.2% |
| 3709548 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 44.0 | 3.60e-01 | 98.5% | 92.3% |
| 3182290 | 174.1.1.4 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 | 0.50 | 38.0 | 3.02e-01 | 78.8% | 73.1% |
D3
medium
residues 5-116
Domain cluster:
rep: NC_054393.1__YP_010049746.1__KCH40_gp090__00077__D11-118