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NC_070820.1__YP_010660059.1__PP583_gp37__00037

Bact-Vir

NC_070820.1__YP_010660059.1__PP583_gp37__00037

Identity

Accession:
NC_070820 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_HS6

TaxID: 1357710

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-92
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 43.0 4.66e-01 92.1% 76.2%
6pnjL00 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.64 45.0 3.52e-01 72.4% 91.7%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 41.0 4.12e-01 73.7% 70.7%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 39.0 3.28e-01 76.3% 96.5%
1ye9A03 1.10.10.1060 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Catalase HPII, helical domain 0.55 39.0 4.28e-01 80.3% 100.0%
1zbtA01 6.10.140.1950 Special › Helix non-globular › Helix Hairpins › 0.54 36.0 3.54e-01 80.3% 63.9%
3pntB00 1.25.40.520 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 41.0 3.39e-01 92.1% 69.4%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 42.0 2.93e-01 90.8% 55.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3633527 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.75 65.0 5.29e-01 94.7% 86.4%
3182290 174.1.1.4 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4267 0.68 42.0 3.43e-01 93.4% 36.2%
3544536 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 45.0 4.01e-01 92.1% 50.5%
4932707 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 49.0 4.09e-01 100.0% 48.0%
3177504 3981.1.1.2 ↗ alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › PANTS-like 0.64 39.0 4.03e-01 72.4% 64.3%
5003363 7000.1.1.1 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 0.64 45.0 4.34e-01 77.6% 64.4%
5002913 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.62 52.0 4.10e-01 97.4% 88.8%
3422854 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.61 53.0 4.37e-01 93.4% 80.0%
3482082 3476.1.1.0 ↗ alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.61 44.0 4.52e-01 77.6% 81.4%
3872677 5089.1.1.12 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › BRINP 0.61 49.0 4.23e-01 100.0% 56.5%
3574120 3226.1.1.2 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp 0.60 52.0 3.23e-01 98.7% 50.4%
4449440 2004.1.1.422 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, RsgA_GTPase 0.60 53.0 3.66e-01 98.7% 69.2%
5010862 633.22.1.1 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR 0.59 41.0 3.44e-01 72.4% 100.0%
3709861 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 3.57e-01 97.4% 94.9%
4857825 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.56 30.0 2.62e-01 82.9% 34.5%
3382811 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 50.0 3.09e-01 98.7% 50.6%
4943762 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 42.0 3.69e-01 86.8% 63.2%
3635376 3755.3.1.298 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING 0.53 46.0 3.72e-01 98.7% 51.9%
4373546 604.39.1.5 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt 0.51 40.0 3.09e-01 86.8% 65.4%
3257678 5000.4.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.50 46.0 3.07e-01 98.7% 27.3%
5000698 604.38.1.0 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle 0.50 40.0 3.61e-01 86.8% 68.6%