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NC_070823.1__YP_010655249.1__PP586_gp23__00023

Bact-Vir

NC_070823.1__YP_010655249.1__PP586_gp23__00023

Identity

Accession:
NC_070823 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_vB_PspS-H40/1

TaxID: 1856120

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-70
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.73 51.0 3.57e-01 73.3% 28.0%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.64 47.0 3.73e-01 78.3% 78.2%
4fzxC00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 50.0 3.73e-01 98.3% 92.7%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 3.44e-01 71.7% 50.0%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.58 48.0 3.63e-01 100.0% 93.3%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 39.0 3.17e-01 70.0% 52.1%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.55 41.0 4.08e-01 81.7% 95.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.45e-01 75.0% 74.7%
1l6rA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 42.0 3.26e-01 91.7% 61.1%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.53 41.0 3.53e-01 86.7% 51.5%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 34.0 3.44e-01 71.7% 63.5%
3rlfF02 3.10.650.10 Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like 0.53 43.0 4.01e-01 96.7% 80.5%
1nrwA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 39.0 3.08e-01 88.3% 61.7%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.51 39.0 3.79e-01 100.0% 76.0%
1uxyA01 3.90.78.10 Alpha Beta › Alpha-Beta Complex › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 › UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 0.51 41.0 3.27e-01 91.7% 68.5%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.59e-01 100.0% 93.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4128787 3439.1.1.0 ↗ a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.66 50.0 5.05e-01 85.0% 85.0%
4059895 3439.1.1.0 ↗ a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.65 49.0 4.97e-01 85.0% 85.0%
3541617 1.1.1.6 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease 0.65 46.0 3.68e-01 75.0% 76.7%
3932485 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.64 52.0 4.22e-01 90.0% 91.3%
4001239 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 43.0 3.76e-01 71.7% 50.5%
3948139 2485.1.1.81 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › TraF 0.63 54.0 4.05e-01 100.0% 75.0%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 43.0 3.53e-01 71.7% 50.9%
4442448 3439.1.1.0 ↗ a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.62 46.0 4.69e-01 85.0% 85.0%
3935794 1.1.1.6 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease 0.61 47.0 3.57e-01 83.3% 70.3%
3497046 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 41.0 3.36e-01 71.7% 45.2%
4414890 3439.1.1.0 ↗ a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.60 45.0 4.52e-01 85.0% 86.7%
3998421 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 41.0 4.03e-01 71.7% 80.0%
4046039 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.59 51.0 4.63e-01 100.0% 91.8%
4023242 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.59 40.0 3.18e-01 71.7% 35.2%
3278865 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.58 43.0 4.28e-01 81.7% 87.7%
3734680 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.57 41.0 2.71e-01 78.3% 42.2%
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.57 44.0 3.68e-01 85.0% 57.1%
3513810 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.24e-01 80.0% 64.4%
4396994 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.56 39.0 2.21e-01 75.0% 93.6%
3962976 206.1.1.29 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF4135 0.55 41.0 2.40e-01 100.0% 8.0%
3590813 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 38.0 4.03e-01 75.0% 86.0%
3208696 109.4.1.2122 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C2 0.55 39.0 2.25e-01 75.0% 18.0%
4665809 313.1.1.1 ↗ a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C 0.54 44.0 3.74e-01 90.0% 60.0%
4177976 2487.1.1.3 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.54 38.0 3.11e-01 75.0% 80.9%
3241140 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.53 46.0 2.65e-01 98.3% 78.2%
3652692 2485.1.1.86 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Alba 0.53 41.0 2.92e-01 85.0% 28.6%
3973892 3994.1.1.2 ↗ a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG › PhnG 0.53 44.0 3.66e-01 98.3% 62.6%
5022956 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 45.0 3.14e-01 100.0% 57.7%
4947734 3326.1.1.1 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.52 42.0 3.52e-01 95.0% 82.6%
4573262 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.52 42.0 2.73e-01 91.7% 69.8%
3936129 3006.1.1.0 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain 0.52 39.0 3.79e-01 85.0% 78.3%
4283859 109.4.1.1161 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MEC1_N 0.51 35.0 2.17e-01 70.0% 27.3%
4572354 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.51 38.0 2.92e-01 86.7% 57.1%
4008902 4268.2.1.20 ↗ alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA › DUF932 0.50 44.0 3.61e-01 100.0% 99.1%
3610057 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 42.0 3.26e-01 96.7% 97.9%