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NC_070826.1__YP_010660212.1__PP590_gp55__00055

Bact-Vir

NC_070826.1__YP_010660212.1__PP590_gp55__00055

Identity

Accession:
NC_070826 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_HS1

TaxID: 1357707

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-54
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 57.0 4.29e-01 100.0% 82.1%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 56.0 3.75e-01 100.0% 35.0%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 56.0 4.22e-01 98.0% 42.7%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 56.0 4.08e-01 98.0% 38.0%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.14e-01 100.0% 71.8%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 55.0 4.22e-01 98.0% 50.9%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 52.0 4.63e-01 98.0% 62.2%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 55.0 3.94e-01 100.0% 36.9%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 55.0 4.10e-01 100.0% 41.4%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.63 49.0 4.10e-01 100.0% 47.3%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 4.51e-01 100.0% 60.9%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 54.0 3.93e-01 100.0% 39.9%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.28e-01 98.0% 83.8%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 52.0 3.86e-01 98.0% 39.7%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 53.0 3.83e-01 98.0% 38.5%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.08e-01 100.0% 86.7%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.08e-01 100.0% 69.3%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 51.0 3.61e-01 98.0% 32.7%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.67e-01 98.0% 35.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.72e-01 100.0% 91.2%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 52.0 3.70e-01 100.0% 61.0%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 51.0 3.91e-01 100.0% 98.4%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 3.81e-01 98.0% 82.0%
3dmbA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 3.68e-01 100.0% 39.0%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 3.90e-01 100.0% 74.3%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.46e-01 95.9% 53.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.51e-01 100.0% 83.3%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 50.0 4.07e-01 98.0% 63.5%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 48.0 3.61e-01 98.0% 38.6%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 48.0 3.58e-01 98.0% 37.8%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.69e-01 100.0% 68.8%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 3.96e-01 98.0% 64.2%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 40.0 2.40e-01 77.6% 95.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 3.78e-01 98.0% 67.6%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.34e-01 100.0% 95.8%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.53e-01 95.9% 82.1%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.67e-01 98.0% 88.3%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.43e-01 100.0% 87.3%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 46.0 3.61e-01 100.0% 41.2%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.55 44.0 4.13e-01 95.9% 90.8%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 44.0 4.45e-01 100.0% 95.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.50e-01 95.9% 86.4%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.54 47.0 3.73e-01 100.0% 47.6%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.49e-01 95.9% 81.0%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.53e-01 98.0% 78.6%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.39e-01 100.0% 62.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.71e-01 100.0% 80.4%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 43.0 3.29e-01 93.9% 37.6%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 36.0 3.97e-01 79.6% 100.0%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 43.0 4.24e-01 100.0% 96.4%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 41.0 3.83e-01 100.0% 67.1%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.52 37.0 3.47e-01 79.6% 76.9%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.42e-01 95.9% 79.2%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.36e-01 100.0% 66.7%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.46e-01 100.0% 76.5%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.36e-01 95.9% 61.9%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.51 41.0 3.83e-01 100.0% 78.3%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.30e-01 100.0% 46.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.50 38.0 2.67e-01 98.0% 21.0%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895387 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 56.0 4.33e-01 98.0% 72.2%
3487225 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 4.05e-01 100.0% 65.7%
3960558 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 56.0 4.17e-01 98.0% 43.2%
3704944 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 55.0 4.48e-01 100.0% 78.0%
4025353 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 4.26e-01 98.0% 84.5%
3507601 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.32e-01 100.0% 94.3%
4021140 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.15e-01 98.0% 73.9%
3172487 220.1.1.57 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.64 53.0 3.85e-01 100.0% 60.0%
4964696 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.63 53.0 4.17e-01 100.0% 82.6%
4125768 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.63 56.0 3.93e-01 100.0% 34.7%
3171221 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 3.84e-01 98.0% 72.1%
5032539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 44.0 4.14e-01 77.6% 98.5%
3273564 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 52.0 4.40e-01 98.0% 77.8%
4001363 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 51.0 3.88e-01 100.0% 89.6%
3248299 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.62 50.0 2.95e-01 98.0% 12.1%
4001211 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 4.54e-01 100.0% 70.5%
3172792 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.62 52.0 4.17e-01 100.0% 59.0%
4958989 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.61 52.0 3.70e-01 98.0% 34.2%
5018380 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.61 54.0 3.84e-01 100.0% 35.3%
3492949 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 52.0 3.84e-01 100.0% 76.4%
3847345 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 4.12e-01 100.0% 79.0%
3259512 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 50.0 3.83e-01 100.0% 74.4%
3252809 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 3.79e-01 98.0% 58.5%
5029031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.62e-01 98.0% 80.0%
3621943 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 3.83e-01 100.0% 61.5%
4582465 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 48.0 3.93e-01 100.0% 85.5%
3537565 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 4.00e-01 87.8% 93.8%
3995160 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 47.0 4.68e-01 98.0% 96.0%
4027068 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.69e-01 98.0% 69.7%
4982196 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 4.19e-01 77.6% 97.1%
5060938 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 3.89e-01 75.5% 91.4%
3467267 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.55 45.0 4.24e-01 100.0% 89.2%
3604642 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 4.26e-01 100.0% 95.6%
3528252 73.1.1.13 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Pellino_RING 0.54 38.0 2.72e-01 75.5% 63.1%
3626094 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.54 44.0 3.30e-01 100.0% 76.1%
5026915 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 44.0 4.38e-01 100.0% 96.0%
1281652 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 43.0 4.24e-01 100.0% 96.4%
4029250 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 36.0 3.20e-01 77.6% 58.0%
3093592 12.1.1.21 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 0.52 39.0 3.09e-01 98.0% 35.8%
3999190 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.52 40.0 3.79e-01 91.8% 70.8%
3762030 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.52 41.0 3.27e-01 100.0% 52.0%
3580256 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 38.0 3.29e-01 95.9% 47.4%