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NC_070829.1__YP_010655494.1__PP630_gp003__00003

Bact-Vir

NC_070829.1__YP_010655494.1__PP630_gp003__00003

Identity

Accession:
NC_070829 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zukovirus› Streptomyces_phage_Zuko

TaxID: 2601695

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-109
PDB
Domain cluster: rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.67 51.0 4.38e-01 80.9% 97.2%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 31.0 2.79e-01 78.7% 32.0%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 33.0 3.05e-01 78.7% 36.8%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 35.0 3.00e-01 78.7% 35.0%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 37.0 3.81e-01 83.1% 63.1%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 32.0 3.42e-01 83.1% 55.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 38.0 3.56e-01 77.5% 50.5%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.59 38.0 3.44e-01 78.7% 48.7%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 34.0 3.29e-01 77.5% 51.0%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.42e-01 80.9% 57.9%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 36.0 3.53e-01 77.5% 60.4%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 39.0 3.58e-01 78.7% 56.3%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 37.0 3.61e-01 77.5% 63.3%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 37.0 3.47e-01 78.7% 57.8%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.76e-01 84.3% 65.2%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 38.0 3.30e-01 76.4% 90.1%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 40.0 3.20e-01 80.9% 41.8%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.52 33.0 2.72e-01 78.7% 33.5%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.52 38.0 3.76e-01 77.5% 88.5%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.52 37.0 3.34e-01 75.3% 95.3%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.57e-01 83.1% 63.9%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 39.0 3.16e-01 80.9% 42.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.34e-01 75.3% 74.2%
4hppA02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.51 41.0 2.80e-01 87.6% 56.0%
2z69B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 3.09e-01 74.2% 81.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.50 37.0 3.00e-01 77.5% 47.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054962 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.74 57.0 5.10e-01 80.9% 100.0%
3628875 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.72 53.0 5.22e-01 77.5% 97.9%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.70 37.0 4.82e-01 78.7% 100.0%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.69 37.0 4.78e-01 78.7% 100.0%
4954871 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.67 49.0 4.54e-01 77.5% 100.0%
4079979 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.65 49.0 4.88e-01 78.7% 98.9%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.64 33.0 4.28e-01 75.3% 97.8%
5066711 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 38.0 3.77e-01 79.8% 55.8%
3979798 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 45.0 4.22e-01 80.9% 66.4%
3588755 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.63e-01 77.5% 93.2%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.59 42.0 4.65e-01 74.2% 100.0%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 34.0 4.15e-01 77.5% 100.0%
4960810 3352.1.1.51 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › AglB_core-like 0.57 40.0 2.37e-01 82.0% 8.3%
3968768 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.57 42.0 4.49e-01 76.4% 98.7%
4619601 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.57 36.0 3.25e-01 78.7% 45.6%
3247494 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 37.0 3.26e-01 77.5% 45.4%
4271892 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 40.0 3.58e-01 78.7% 52.8%
5044524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 36.0 3.42e-01 83.1% 54.3%
4083103 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 37.0 3.35e-01 77.5% 50.4%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 4.26e-01 75.3% 94.3%
3646906 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 41.0 4.09e-01 82.0% 98.9%
2324048 1185.1.1.1 ↗ a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › DUF6911 0.53 34.0 2.99e-01 78.7% 42.0%
4327417 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.53 36.0 3.32e-01 78.7% 53.0%
3490139 304.9.1.81 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A 0.53 41.0 3.70e-01 82.0% 82.5%
163527 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 38.0 3.62e-01 83.1% 63.3%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 4.05e-01 75.3% 97.3%
149114 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 38.0 3.56e-01 83.1% 62.7%
3420779 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 38.0 3.11e-01 77.5% 76.9%
3239591 382.1.1.20 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.51 40.0 3.89e-01 84.3% 90.0%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 35.0 3.13e-01 79.8% 48.5%
3955717 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.51 36.0 3.32e-01 78.7% 54.4%
4121299 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.51 41.0 3.02e-01 88.8% 53.3%
4332271 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.50 38.0 3.39e-01 79.8% 76.4%
3818303 3767.1.1.0 ↗ a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.50 39.0 3.23e-01 86.5% 66.5%