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NC_070829.1__YP_010655557.1__PP630_gp066__00066
Bact-VirNC_070829.1__YP_010655557.1__PP630_gp066__00066
Identity
- Accession:
- NC_070829 ↗
- Kingdom:
- phage
Quality
65.4
mean pLDDT
Taxonomy
TaxID: 2601695
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-113
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 42.0 | 3.70e-01 | 100.0% | 40.7% |
| 2fb0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 42.0 | 3.93e-01 | 100.0% | 52.1% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 41.0 | 3.83e-01 | 100.0% | 52.1% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 37.0 | 3.15e-01 | 100.0% | 35.4% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.61 | 48.0 | 3.36e-01 | 86.8% | 35.9% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 46.0 | 3.37e-01 | 84.2% | 90.9% |
| 6p66D01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.58 | 29.0 | 2.58e-01 | 76.3% | 33.9% |
| 1dbzA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 41.0 | 3.02e-01 | 80.3% | 34.8% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.53 | 40.0 | 3.91e-01 | 80.3% | 81.0% |
| 6fjxA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 44.0 | 3.10e-01 | 94.7% | 76.4% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 35.0 | 3.30e-01 | 100.0% | 56.5% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.95e-01 | 76.3% | 95.9% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.32e-01 | 71.1% | 82.4% |
| 4jz6A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 42.0 | 2.95e-01 | 90.8% | 43.9% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.50 | 38.0 | 2.80e-01 | 80.3% | 41.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036533 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.68 | 44.0 | 3.11e-01 | 92.1% | 22.2% |
| 3515089 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.64 | 37.0 | 3.85e-01 | 94.7% | 60.3% |
| 3649913 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.64 | 46.0 | 3.56e-01 | 75.0% | 42.9% |
| 3624104 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 35.0 | 3.63e-01 | 97.4% | 54.8% |
| 5043905 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.62 | 43.0 | 3.13e-01 | 100.0% | 24.9% |
| 3958491 | 3513.1.1.4 ↗ | a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › PF27220 | 0.61 | 41.0 | 3.29e-01 | 93.4% | 35.3% |
| 4943839 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.59 | 46.0 | 3.32e-01 | 82.9% | 91.5% |
| 5011884 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.58 | 46.0 | 3.22e-01 | 86.8% | 48.1% |
| 4948984 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.58 | 51.0 | 3.59e-01 | 97.4% | 70.0% |
| 5035423 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 32.0 | 3.09e-01 | 80.3% | 45.9% |
| 4943531 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 32.0 | 2.75e-01 | 81.6% | 37.5% |
| 2724409 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.55 | 47.0 | 3.33e-01 | 100.0% | 65.3% |
| 4968960 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 41.0 | 2.99e-01 | 100.0% | 29.1% |
| 4019993 | 101.1.21.1 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N | 0.52 | 44.0 | 3.06e-01 | 94.7% | 77.8% |
| 5052847 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.52 | 36.0 | 2.53e-01 | 97.4% | 21.6% |
| 4442629 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.52 | 42.0 | 2.95e-01 | 92.1% | 27.2% |
| 3506977 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.52 | 36.0 | 2.95e-01 | 72.4% | 51.7% |
| 3466238 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.52 | 40.0 | 2.54e-01 | 86.8% | 41.3% |
| 3740990 | 301.8.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N | 0.52 | 45.0 | 4.04e-01 | 100.0% | 90.0% |
| 4107395 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.51 | 43.0 | 4.39e-01 | 98.7% | 94.7% |
| 5038451 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 41.0 | 3.62e-01 | 100.0% | 59.1% |
| 5026722 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 38.0 | 3.15e-01 | 78.9% | 83.0% |
| 3760199 | 331.2.1.6 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › Med14_RM8 | 0.51 | 37.0 | 3.42e-01 | 81.6% | 59.0% |
| 2541072 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.51 | 41.0 | 2.99e-01 | 93.4% | 96.8% |