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NC_070836.1__YP_010656207.1__PP639_gp021__00021

Bact-Vir

NC_070836.1__YP_010656207.1__PP639_gp021__00021

Identity

Accession:
NC_070836 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seamegvirus› Arthrobacter_phage_Seahorse

TaxID: 2419611

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-93
PDB
Domain cluster: rep: MG941013.1__AVJ50955.1__XHP1_00018__00018__D216-300
D2 high residues 98-230
PDB
Domain cluster: rep: MZ150789.1__QWY84601.1__SEA_FOOTLOOSE_19__00019__D96-123_145-224
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.74 55.0 5.98e-01 100.0% 93.6%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.70 45.0 5.07e-01 100.0% 84.8%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 46.0 4.50e-01 100.0% 60.5%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.69 45.0 4.66e-01 100.0% 69.4%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 33.0 4.23e-01 83.5% 78.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 39.0 4.30e-01 94.7% 73.1%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 40.0 4.41e-01 100.0% 76.0%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 39.0 4.42e-01 96.2% 79.0%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 33.0 4.32e-01 100.0% 92.8%
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 40.0 4.40e-01 100.0% 76.6%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 38.0 4.25e-01 100.0% 74.3%
1orfA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 39.0 4.34e-01 100.0% 77.1%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.63 38.0 4.09e-01 100.0% 68.1%
4ympA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 36.0 3.87e-01 100.0% 65.2%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 40.0 4.36e-01 100.0% 76.8%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 39.0 4.27e-01 100.0% 75.5%
1ntpA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 37.0 4.15e-01 100.0% 75.7%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 39.0 4.28e-01 100.0% 77.6%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 38.0 4.07e-01 100.0% 70.8%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 53.0 4.96e-01 100.0% 76.5%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 41.0 4.30e-01 100.0% 74.6%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 37.0 4.35e-01 89.5% 83.3%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.62 42.0 4.30e-01 97.0% 72.8%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 40.0 3.85e-01 100.0% 56.1%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.61 38.0 4.14e-01 99.2% 76.2%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 52.0 4.92e-01 100.0% 77.5%
1el6A02 2.20.20.20 Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain 0.60 25.0 3.69e-01 77.4% 100.0%
3beuA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 36.0 4.06e-01 100.0% 77.8%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 38.0 4.13e-01 100.0% 75.2%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 39.0 4.33e-01 87.2% 85.3%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 31.0 3.72e-01 75.2% 75.0%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 41.0 4.26e-01 100.0% 77.5%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 37.0 4.06e-01 100.0% 77.6%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 32.0 4.01e-01 80.5% 89.7%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 39.0 4.16e-01 100.0% 79.6%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 34.0 3.74e-01 100.0% 72.6%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 4.41e-01 100.0% 76.9%
3govB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 40.0 4.20e-01 100.0% 79.7%
4pxeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 3.84e-01 90.2% 73.5%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 38.0 3.18e-01 100.0% 42.5%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.54 49.0 4.18e-01 100.0% 74.8%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 48.0 4.33e-01 100.0% 72.1%
2xxlA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 39.0 3.95e-01 100.0% 76.9%
2dnmA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 29.0 3.29e-01 90.2% 68.0%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 34.0 3.56e-01 73.7% 73.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981654 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.80 62.0 6.77e-01 97.0% 97.3%
3587074 1.1.13.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.76 57.0 6.18e-01 100.0% 92.7%
3164699 1.1.13.33 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.75 59.0 6.34e-01 100.0% 95.7%
5082881 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 61.0 6.28e-01 100.0% 93.6%
4059301 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.74 57.0 6.28e-01 100.0% 97.3%
3968432 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 43.0 4.77e-01 100.0% 74.3%
3580020 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 67.0 5.83e-01 100.0% 80.0%
4057590 1.1.5.86 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.71 46.0 4.56e-01 100.0% 62.1%
5007131 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.71 39.0 4.50e-01 94.0% 73.7%
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 58.0 5.94e-01 100.0% 90.0%
5004559 1.1.13.75 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.71 65.0 6.49e-01 99.2% 100.0%
5026312 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.70 32.0 4.10e-01 74.4% 72.5%
5039437 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.70 33.0 4.04e-01 75.2% 69.4%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.70 54.0 4.32e-01 100.0% 40.4%
4989380 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 32.0 4.52e-01 75.2% 90.8%
4957999 304.8.1.22 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.69 33.0 3.92e-01 77.4% 64.2%
3995251 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.69 32.0 4.10e-01 75.2% 73.8%
5047519 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.69 31.0 3.92e-01 74.4% 70.0%
4927015 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 32.0 4.01e-01 74.4% 72.5%
5040464 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 37.0 4.27e-01 94.7% 73.7%
2642579 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.67 55.0 5.64e-01 100.0% 91.5%
3976188 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.66 56.0 5.21e-01 100.0% 73.3%
3991601 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 42.0 3.99e-01 96.2% 54.1%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.64 53.0 5.22e-01 100.0% 84.3%
4273561 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.64 42.0 4.20e-01 94.7% 64.4%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.63 55.0 5.38e-01 100.0% 88.0%
3519345 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 40.0 3.19e-01 100.0% 31.7%
2877144 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 43.0 3.28e-01 97.0% 30.5%
1844125 1.1.13.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CoV_NSP9 0.63 38.0 4.15e-01 100.0% 71.2%
3232599 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 40.0 3.23e-01 100.0% 33.1%
3096576 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 55.0 5.25e-01 100.0% 82.4%
1320672 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 42.0 3.34e-01 97.0% 34.6%
3859610 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 38.0 3.21e-01 100.0% 36.4%
4214302 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.61 41.0 3.49e-01 95.5% 41.4%
3721039 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.61 33.0 4.30e-01 72.9% 98.6%
3518574 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 39.0 3.77e-01 100.0% 57.4%
5022644 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 33.0 3.73e-01 89.5% 71.6%
3398452 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 39.0 3.12e-01 100.0% 34.0%
3428351 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.59 40.0 3.57e-01 81.2% 47.7%
4118093 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.58 47.0 4.49e-01 100.0% 73.5%
3224340 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.57 42.0 3.41e-01 100.0% 40.8%
3506614 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.57 40.0 3.17e-01 100.0% 34.8%
4943359 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.57 39.0 3.28e-01 81.2% 40.4%
4275176 304.102.1.5 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.56 39.0 3.29e-01 81.2% 41.3%
3500523 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 42.0 3.27e-01 100.0% 37.1%
5036917 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.56 38.0 3.69e-01 79.7% 61.3%
3506886 1.1.13.58 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Trypsin 0.56 40.0 3.52e-01 100.0% 49.0%
4992907 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.56 46.0 4.42e-01 100.0% 75.5%
3505198 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 40.0 3.56e-01 100.0% 50.8%
4557453 304.102.1.9 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C 0.56 39.0 3.21e-01 81.2% 38.8%
4077036 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.55 38.0 3.23e-01 81.2% 41.8%
3595076 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.55 39.0 3.15e-01 81.2% 35.9%
3710599 304.102.1.5 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.55 39.0 3.13e-01 81.2% 35.9%
5033279 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.55 39.0 3.25e-01 72.9% 68.3%
4401956 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.55 33.0 3.75e-01 86.5% 81.1%
5001314 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.55 38.0 3.16e-01 81.2% 38.8%
4014778 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.55 50.0 4.14e-01 100.0% 65.1%
3501379 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 38.0 3.05e-01 100.0% 35.6%
3391409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.63e-01 88.0% 62.6%
4978221 304.102.1.2 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.53 46.0 3.95e-01 94.0% 91.4%
4945745 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.53 39.0 3.20e-01 77.4% 55.8%
3183073 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 48.0 3.80e-01 100.0% 50.0%
4462681 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 40.0 3.43e-01 81.2% 60.0%
4366827 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 40.0 3.34e-01 81.2% 56.6%
3678951 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 40.0 3.32e-01 81.2% 56.2%
4933784 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.52 38.0 3.26e-01 77.4% 62.3%
5039332 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.52 38.0 3.15e-01 78.2% 52.7%
3807657 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.51 39.0 3.23e-01 81.2% 52.8%
3501988 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.51 37.0 3.08e-01 77.4% 53.5%
3415867 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.51 37.0 3.14e-01 78.2% 56.7%