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NC_070837.1__YP_010656327.1__PP640_gp41__00041
Bact-VirNC_070837.1__YP_010656327.1__PP640_gp41__00041
Identity
- Accession:
- NC_070837 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Taxonomy
TaxID: 2419957
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 37-89
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.81 | 70.0 | 5.86e-01 | 98.1% | 76.3% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.78 | 55.0 | 3.79e-01 | 73.6% | 84.1% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.71 | 44.0 | 4.70e-01 | 86.8% | 73.3% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.69 | 55.0 | 4.61e-01 | 92.5% | 52.3% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 52.0 | 3.74e-01 | 92.5% | 27.1% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.68 | 49.0 | 3.86e-01 | 90.6% | 37.3% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 44.0 | 3.82e-01 | 88.7% | 44.2% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 52.0 | 5.10e-01 | 100.0% | 82.5% |
| 1b96A00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.64 | 52.0 | 3.42e-01 | 100.0% | 20.1% |
| 1ic8A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 55.0 | 4.96e-01 | 100.0% | 70.3% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.63 | 46.0 | 3.37e-01 | 79.2% | 83.8% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.63 | 47.0 | 3.71e-01 | 88.7% | 39.6% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.62 | 48.0 | 3.72e-01 | 90.6% | 42.5% |
| 5k3hA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.61 | 39.0 | 3.01e-01 | 83.0% | 28.1% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 46.0 | 4.42e-01 | 92.5% | 69.8% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 47.0 | 4.11e-01 | 96.2% | 58.4% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.60 | 52.0 | 4.89e-01 | 100.0% | 83.1% |
| 1vzsA01 | 1.10.246.110 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 | 0.59 | 44.0 | 4.23e-01 | 84.9% | 87.3% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 45.0 | 4.30e-01 | 86.8% | 75.0% |
| 7zs9401 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.57 | 50.0 | 3.29e-01 | 100.0% | 48.0% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.57 | 48.0 | 4.44e-01 | 100.0% | 80.0% |
| 3iruA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 41.0 | 3.83e-01 | 96.2% | 64.1% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.54 | 41.0 | 3.74e-01 | 84.9% | 68.9% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 43.0 | 4.02e-01 | 94.3% | 70.6% |
| 2v4iB01 | 3.30.2330.10 | Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily | 0.53 | 46.0 | 4.07e-01 | 96.2% | 97.4% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.53 | 40.0 | 3.43e-01 | 86.8% | 71.6% |
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 39.0 | 3.74e-01 | 86.8% | 100.0% |
| 3lyeA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 43.0 | 2.79e-01 | 100.0% | 78.6% |
| 2lqlA02 | 1.10.287.2900 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 37.0 | 3.96e-01 | 77.4% | 93.2% |
| 1z8fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 3.14e-01 | 90.6% | 44.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4682458 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.72 | 62.0 | 4.60e-01 | 100.0% | 40.0% |
| 4111691 | 5086.1.1.117 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › WWC1 | 0.69 | 47.0 | 2.97e-01 | 73.6% | 14.1% |
| 4638470 | 101.1.2.311 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA12 | 0.69 | 53.0 | 3.73e-01 | 84.9% | 63.5% |
| 5007853 | 101.1.2.192 ↗ | alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C | 0.67 | 51.0 | 4.73e-01 | 96.2% | 65.2% |
| 3542362 | 389.1.1.127 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ANATO | 0.67 | 41.0 | 4.24e-01 | 88.7% | 66.0% |
| 4547477 | 601.2.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr | 0.66 | 49.0 | 3.82e-01 | 79.2% | 40.9% |
| 5018039 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.66 | 49.0 | 3.77e-01 | 84.9% | 36.5% |
| 4383496 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.66 | 49.0 | 3.90e-01 | 86.8% | 38.3% |
| 3598143 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.65 | 54.0 | 4.00e-01 | 100.0% | 33.1% |
| 3813837 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.65 | 46.0 | 4.14e-01 | 94.3% | 53.3% |
| 5064397 | 5086.1.1.231 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook | 0.62 | 51.0 | 3.46e-01 | 96.2% | 24.6% |
| 3440522 | 5069.1.3.12 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF6490 | 0.62 | 49.0 | 4.05e-01 | 86.8% | 49.5% |
| 5069661 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.62 | 49.0 | 4.12e-01 | 100.0% | 51.1% |
| 3929630 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.61 | 51.0 | 3.69e-01 | 94.3% | 38.7% |
| 4020856 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.61 | 51.0 | 3.94e-01 | 100.0% | 45.2% |
| 3579266 | 5055.1.1.11 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › Cation_ATPase_N | 0.60 | 48.0 | 4.23e-01 | 86.8% | 69.3% |
| 4449193 | 1134.1.2.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain | 0.59 | 47.0 | 4.73e-01 | 100.0% | 85.5% |
| 3578256 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.59 | 46.0 | 4.19e-01 | 94.3% | 64.3% |
| 3594644 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.58 | 46.0 | 3.35e-01 | 88.7% | 65.3% |
| 3689241 | 2007.15.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr | 0.58 | 49.0 | 3.26e-01 | 100.0% | 37.4% |
| 3225949 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.58 | 47.0 | 3.51e-01 | 96.2% | 40.0% |
| 3823977 | 109.4.1.2069 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30216 | 0.58 | 50.0 | 3.04e-01 | 96.2% | 24.8% |
| 3518992 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.58 | 48.0 | 3.77e-01 | 94.3% | 53.0% |
| 3558586 | 3910.1.1.1 ↗ | extended segments › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › PMC2NT | 0.57 | 48.0 | 4.00e-01 | 96.2% | 52.6% |
| 1248123 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.57 | 48.0 | 3.60e-01 | 100.0% | 37.8% |
| 3692753 | 5086.1.1.12 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 | 0.56 | 44.0 | 3.24e-01 | 86.8% | 34.0% |
| 3550496 | 4970.1.1.4 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N | 0.56 | 49.0 | 3.36e-01 | 100.0% | 92.6% |
| 3739454 | 192.5.1.38 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 | 0.56 | 46.0 | 3.70e-01 | 92.5% | 46.7% |
| 3445163 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 45.0 | 4.50e-01 | 98.1% | 92.7% |