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NC_070837.1__YP_010656329.1__PP640_gp43__00043

Bact-Vir

NC_070837.1__YP_010656329.1__PP640_gp43__00043

Identity

Accession:
NC_070837 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fajavirus› Arthrobacter_phage_Faja

TaxID: 2419957

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-56
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 63.0 4.85e-01 100.0% 51.3%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 36.0 2.96e-01 93.9% 26.7%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 41.0 3.83e-01 93.9% 46.0%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 37.0 2.68e-01 98.0% 19.7%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 50.0 4.62e-01 100.0% 63.6%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 45.0 3.63e-01 71.4% 78.1%
6n3oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 43.0 3.58e-01 71.4% 76.7%
4af3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 42.0 3.53e-01 71.4% 78.4%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 49.0 3.28e-01 91.8% 95.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.57e-01 83.7% 42.2%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 38.0 3.14e-01 75.5% 31.3%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.59 45.0 3.49e-01 83.7% 43.4%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.69e-01 89.8% 49.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.00e-01 75.5% 30.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 38.0 3.18e-01 87.8% 37.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.68e-01 100.0% 48.3%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.59e-01 100.0% 40.5%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 46.0 3.51e-01 95.9% 83.3%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 47.0 3.59e-01 100.0% 47.7%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.36e-01 85.7% 41.2%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.27e-01 83.7% 40.5%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.35e-01 93.9% 35.5%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 44.0 3.33e-01 100.0% 88.3%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 2.85e-01 91.8% 77.4%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.36e-01 95.9% 44.3%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 2.98e-01 79.6% 33.9%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 44.0 2.73e-01 100.0% 93.2%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.30e-01 100.0% 73.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 36.0 3.49e-01 98.0% 64.9%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 2.92e-01 83.7% 41.1%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 43.0 4.14e-01 100.0% 86.0%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 2.95e-01 95.9% 34.4%
1z9hA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.69e-01 98.0% 80.0%
5vbfA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 38.0 2.42e-01 87.8% 37.8%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4989457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 50.0 4.98e-01 100.0% 80.0%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.66 54.0 4.61e-01 93.9% 72.9%
3256497 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.66 46.0 3.23e-01 75.5% 26.7%
3538869 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.65 46.0 3.20e-01 75.5% 30.3%
4004358 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.62 51.0 5.10e-01 98.0% 94.0%
3594576 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 46.0 3.66e-01 83.7% 60.0%
3271679 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 3.07e-01 75.5% 28.3%
4823230 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 42.0 3.67e-01 75.5% 64.2%
3733718 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.61 44.0 3.75e-01 83.7% 45.9%
3925367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.18e-01 87.8% 26.7%
3713222 220.1.1.263 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_29 0.59 44.0 3.54e-01 85.7% 38.2%
3569462 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 3.19e-01 81.6% 35.0%
3513128 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.59 43.0 3.14e-01 81.6% 32.7%
3702172 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 43.0 3.99e-01 81.6% 78.5%
3488509 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.57 48.0 3.34e-01 98.0% 59.4%
4849322 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 42.0 3.03e-01 85.7% 39.2%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.08e-01 81.6% 31.7%
3356481 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.56 41.0 3.63e-01 98.0% 48.2%
3174481 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 43.0 2.95e-01 81.6% 60.0%
None — 0.56 47.0 2.94e-01 100.0% 43.6%
3401112 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.56 41.0 3.94e-01 83.7% 81.7%
3458525 5.1.5.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 0.55 41.0 2.65e-01 85.7% 22.0%
3918879 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.01e-01 85.7% 27.3%
3232615 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.55 40.0 2.72e-01 81.6% 20.5%
3205749 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.32e-01 89.8% 40.0%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.02e-01 98.0% 77.5%
3990109 2484.1.1.102 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.55 45.0 3.42e-01 98.0% 35.6%
3737804 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.54 37.0 2.98e-01 87.8% 34.3%
5078256 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 43.0 3.02e-01 95.9% 74.9%
3583039 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 44.0 3.29e-01 100.0% 34.8%
3998194 220.1.1.68 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.54 36.0 2.82e-01 73.5% 35.8%
3906610 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.54 41.0 3.00e-01 98.0% 29.3%
3550161 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 43.0 3.31e-01 100.0% 75.4%
3178078 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.54 41.0 2.93e-01 87.8% 26.7%
4953226 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 36.0 3.38e-01 71.4% 61.5%
3585813 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.53 42.0 3.91e-01 89.8% 76.9%
3753697 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.83e-01 83.7% 78.3%
3743938 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.27e-01 98.0% 47.7%
1822040 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 44.0 3.15e-01 95.9% 32.5%
3900846 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.24e-01 89.8% 45.5%
3301519 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.50 42.0 3.66e-01 95.9% 91.3%
3388095 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.50 42.0 2.98e-01 100.0% 100.0%