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NC_070837.1__YP_010656333.1__PP640_gp47__00047
Bact-VirNC_070837.1__YP_010656333.1__PP640_gp47__00047
Identity
- Accession:
- NC_070837 ↗
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Taxonomy
TaxID: 2419957
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-69
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cxiA02 | 3.50.40.10 | Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 | 0.69 | 49.0 | 3.51e-01 | 73.5% | 83.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.63 | 51.0 | 3.90e-01 | 91.2% | 57.5% |
| 4eahA00 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.58 | 50.0 | 3.18e-01 | 98.5% | 26.3% |
| 4y0eB00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.52 | 36.0 | 2.40e-01 | 72.1% | 60.6% |
| 1zd0A01 | 3.30.2380.10 | Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB | 0.52 | 36.0 | 3.02e-01 | 73.5% | 88.5% |
| 1p4qA00 | 6.10.140.2200 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 23.0 | 2.62e-01 | 79.4% | 53.8% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.51 | 37.0 | 3.28e-01 | 79.4% | 57.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959664 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.74 | 50.0 | 3.35e-01 | 70.6% | 39.2% |
| 3256023 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.63 | 43.0 | 3.50e-01 | 72.1% | 61.5% |
| 3766042 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.57 | 41.0 | 3.65e-01 | 85.3% | 50.0% |
| 3544162 | 2006.1.6.22 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 | 0.55 | 38.0 | 2.81e-01 | 72.1% | 87.8% |
| 5052692 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.53 | 36.0 | 2.35e-01 | 70.6% | 69.2% |
| 3168883 | 10.32.1.205 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ams1-like_1st | 0.53 | 36.0 | 2.82e-01 | 72.1% | 86.9% |
| 3218205 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 35.0 | 2.98e-01 | 73.5% | 74.4% |
| 3622901 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.51 | 36.0 | 3.16e-01 | 76.5% | 56.4% |