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NC_070840.1__YP_010656702.1__PP651_gp01__00001

Bact-Vir

NC_070840.1__YP_010656702.1__PP651_gp01__00001

Identity

Accession:
NC_070840 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Shantouvirus› Aeromonas_phage_ZPAH14

TaxID: 2924887

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-72
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.70 61.0 4.97e-01 96.6% 73.3%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.69 54.0 4.76e-01 82.8% 72.8%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.67 58.0 3.62e-01 100.0% 24.3%
2n7zA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 55.0 4.63e-01 98.3% 63.2%
4dwnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 58.0 4.87e-01 98.3% 71.1%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.65 53.0 4.51e-01 91.4% 77.3%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 47.0 3.04e-01 77.6% 74.5%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 50.0 4.31e-01 84.5% 78.0%
1jswA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.64 53.0 4.17e-01 96.6% 68.6%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.64 47.0 4.64e-01 84.5% 73.8%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.63 45.0 3.60e-01 75.9% 85.3%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.63 53.0 4.09e-01 100.0% 58.9%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.63 54.0 4.90e-01 100.0% 90.1%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 49.0 4.31e-01 86.2% 77.3%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 52.0 4.05e-01 100.0% 59.4%
1mjtB01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.62 54.0 4.21e-01 100.0% 75.2%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 49.0 4.16e-01 86.2% 79.2%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 53.0 3.34e-01 98.3% 47.9%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 51.0 3.94e-01 96.6% 55.7%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 50.0 4.65e-01 98.3% 90.9%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 50.0 4.39e-01 96.6% 67.7%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 50.0 4.33e-01 100.0% 81.4%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.59 38.0 3.71e-01 100.0% 60.3%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.96e-01 70.7% 86.4%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.58 46.0 3.25e-01 86.2% 85.9%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.57 47.0 4.52e-01 100.0% 97.2%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 35.0 3.24e-01 100.0% 46.2%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 42.0 4.38e-01 87.9% 92.5%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 49.0 4.29e-01 96.6% 70.1%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 49.0 4.33e-01 96.6% 69.4%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 47.0 3.93e-01 100.0% 73.2%
3no6A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.56 46.0 3.22e-01 100.0% 72.8%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 38.0 3.81e-01 70.7% 88.5%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.56 42.0 3.91e-01 86.2% 63.5%
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.54 45.0 3.78e-01 98.3% 97.2%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 45.0 3.73e-01 100.0% 90.7%
3n98A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.51 41.0 2.48e-01 87.9% 82.5%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.52e-01 77.6% 71.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940293 188.1.1.0 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.77 44.0 2.93e-01 100.0% 15.0%
4180990 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 66.0 5.98e-01 100.0% 92.5%
3286776 3716.1.1.0 ↗ alpha arrays › DUF3349 › DUF3349 › DUF3349 0.75 54.0 4.55e-01 84.5% 46.3%
3544445 101.26.1.0 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain 0.68 47.0 5.08e-01 84.5% 97.8%
4291782 4952.1.1.0 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.67 57.0 4.68e-01 96.6% 69.1%
137641 221.3.1.4 ↗ a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains › GA-like 0.67 49.0 5.00e-01 84.5% 80.4%
4133737 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.67 58.0 4.10e-01 100.0% 41.5%
5010597 5058.1.1.99 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF373 0.66 47.0 3.61e-01 77.6% 58.6%
3372157 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.65 48.0 4.30e-01 79.3% 83.5%
4176750 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.65 56.0 3.99e-01 100.0% 38.9%
4414196 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.65 55.0 4.03e-01 100.0% 46.3%
5016007 632.13.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like 0.64 45.0 4.86e-01 89.7% 100.0%
5025541 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.64 55.0 4.00e-01 100.0% 42.3%
3549109 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.64 56.0 4.77e-01 98.3% 74.7%
3648217 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 46.0 3.94e-01 79.3% 60.0%
3596444 632.13.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like 0.64 45.0 4.79e-01 87.9% 97.8%
4293559 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.64 54.0 3.92e-01 100.0% 42.9%
4382946 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 53.0 3.66e-01 98.3% 33.0%
3386017 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.62 50.0 3.46e-01 91.4% 69.5%
4491898 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.61 52.0 3.74e-01 100.0% 38.4%
4200552 539.1.1.1 ↗ few secondary structure elements › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like › Crust_neurohorm 0.61 50.0 4.93e-01 100.0% 87.3%
4159704 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.60 49.0 3.63e-01 100.0% 39.9%
2723199 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.60 49.0 4.01e-01 98.3% 74.4%
3521686 110.1.1.2 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.59 51.0 4.41e-01 96.6% 70.0%
3905947 110.1.1.11 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › HSR 0.58 49.0 4.06e-01 96.6% 63.6%
3965569 150.1.1.183 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Transposase_20 0.56 46.0 3.39e-01 98.3% 92.8%
5062132 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 3.30e-01 100.0% 40.0%
4979789 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.50 34.0 3.54e-01 82.8% 78.2%
D2 high residues 140-312
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z7uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 38.0 4.79e-01 83.8% 75.5%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 37.0 4.94e-01 83.2% 82.7%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 38.0 4.19e-01 86.7% 58.5%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 36.0 4.96e-01 83.2% 86.8%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 37.0 4.76e-01 83.2% 79.4%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 38.0 4.30e-01 87.3% 62.5%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 35.0 4.77e-01 82.1% 83.9%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 38.0 4.23e-01 87.3% 61.8%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 35.0 5.10e-01 86.1% 100.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 37.0 3.93e-01 86.7% 54.2%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 36.0 4.10e-01 87.3% 60.3%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 35.0 4.14e-01 86.1% 63.5%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 37.0 4.23e-01 87.3% 63.4%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 36.0 4.17e-01 87.3% 62.9%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 38.0 4.29e-01 87.3% 64.2%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 29.0 4.65e-01 76.9% 100.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 36.0 4.72e-01 85.0% 84.0%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 37.0 5.05e-01 83.2% 98.8%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 39.0 5.21e-01 87.9% 100.0%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 37.0 5.10e-01 94.2% 100.0%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 36.0 4.03e-01 86.1% 59.9%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 37.0 5.05e-01 91.3% 100.0%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 36.0 3.96e-01 87.3% 58.2%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 36.0 3.60e-01 86.1% 48.0%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 35.0 4.76e-01 81.5% 91.2%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 38.0 4.83e-01 74.6% 89.1%
4e70A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 38.0 4.82e-01 74.0% 89.1%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 34.0 4.85e-01 85.5% 100.0%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 40.0 5.03e-01 86.1% 94.3%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 35.0 4.84e-01 89.0% 100.0%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 37.0 4.30e-01 87.3% 73.2%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 38.0 4.71e-01 84.4% 88.7%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 36.0 3.98e-01 86.1% 63.8%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.67 35.0 4.81e-01 79.8% 100.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 37.0 4.15e-01 94.2% 67.9%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 35.0 3.80e-01 87.3% 58.7%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 35.0 4.22e-01 82.7% 76.1%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 36.0 4.44e-01 80.9% 83.0%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 36.0 4.79e-01 84.4% 100.0%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 36.0 4.53e-01 75.7% 92.2%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 33.0 4.26e-01 82.1% 90.4%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 41.0 4.66e-01 85.0% 89.8%
1mswD01 1.10.1320.10 Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain 0.59 52.0 4.24e-01 93.6% 62.9%
2xzmT00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.84e-01 90.8% 93.3%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.55 31.0 3.85e-01 98.8% 95.8%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.52 28.0 3.16e-01 77.5% 67.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082589 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.81 37.0 5.47e-01 82.1% 95.0%
5040897 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.79 35.0 5.35e-01 83.2% 98.7%
5050401 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 39.0 5.16e-01 80.9% 86.0%
5080526 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 38.0 4.60e-01 82.7% 71.3%
5036720 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.77 37.0 5.29e-01 83.8% 96.4%
4926786 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 34.0 5.00e-01 83.2% 92.5%
1888715 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.76 37.0 4.20e-01 86.1% 60.3%
5019927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 44.0 5.67e-01 92.5% 100.0%
4937481 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 37.0 4.57e-01 83.2% 73.6%
4972222 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 37.0 4.92e-01 86.1% 84.0%
5035276 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 39.0 5.37e-01 82.1% 97.8%
4940464 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.75 38.0 4.73e-01 83.2% 77.3%
5039584 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.75 32.0 4.69e-01 80.3% 87.5%
4535381 101.1.2.603 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.75 39.0 3.57e-01 93.6% 39.1%
5045969 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.74 36.0 4.74e-01 80.3% 83.2%
4543264 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 42.0 4.36e-01 79.2% 58.8%
4943350 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 38.0 5.03e-01 76.3% 87.9%
3666427 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 36.0 3.87e-01 80.9% 52.3%
4649222 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.74 38.0 4.33e-01 87.3% 65.4%
1291586 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.73 37.0 4.12e-01 87.3% 60.4%
4132207 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.73 38.0 4.12e-01 87.3% 60.0%
3468855 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.73 39.0 4.11e-01 83.2% 57.4%
3468120 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.72 36.0 5.12e-01 82.1% 98.8%
4992272 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 37.0 4.48e-01 86.1% 73.3%
3169535 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.72 37.0 4.74e-01 77.5% 85.0%
4600617 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.72 42.0 4.50e-01 90.2% 66.0%
3500170 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 35.0 4.75e-01 83.2% 91.1%
5040556 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 38.0 4.50e-01 82.1% 75.0%
4968342 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 36.0 4.51e-01 86.7% 80.0%
4029108 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 35.0 4.32e-01 84.4% 75.2%
3364232 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.70 35.0 4.98e-01 83.2% 100.0%
5013440 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 39.0 4.35e-01 89.0% 68.6%
5048954 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 36.0 4.31e-01 80.3% 74.8%
4651301 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.68 39.0 4.76e-01 75.7% 86.1%
3940330 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.67 33.0 4.70e-01 80.3% 98.8%
3167163 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.67 37.0 4.85e-01 83.8% 96.8%
4940054 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 34.0 4.50e-01 84.4% 90.5%
4928669 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.65 37.0 4.58e-01 84.4% 90.5%
3648804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 38.0 4.53e-01 84.4% 88.7%
235960 101.1.2.229 ↗ alpha arrays › HTH › HTH › winged helix domain › SIR3_C 0.62 41.0 4.66e-01 85.0% 89.8%
4025592 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.62 38.0 4.71e-01 79.8% 96.4%
3183587 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.60 37.0 3.40e-01 80.9% 47.6%
3166551 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.59 36.0 4.28e-01 84.4% 87.5%
3487542 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.57 37.0 4.50e-01 94.8% 100.0%
3651024 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.57 36.0 4.43e-01 98.3% 100.0%
4609006 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.56 49.0 4.48e-01 94.8% 99.6%
4939541 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 33.0 3.95e-01 97.7% 87.4%
3722124 101.1.2.165 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC_WH_C 0.54 38.0 4.33e-01 83.8% 93.9%
3547233 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.54 41.0 3.99e-01 78.0% 96.3%
4944440 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.47e-01 83.8% 100.0%
5000260 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.92e-01 83.2% 80.0%
D3 medium residues 315-460
PDB
Domain cluster: rep: KY709296.1__ARM70587.1__SppYZU05_61__00061__D1-115
D4 medium residues 749-845
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aroP03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.79 69.0 5.89e-01 93.8% 71.3%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.72 36.0 4.25e-01 97.9% 68.1%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 41.0 4.18e-01 100.0% 63.4%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 40.0 4.18e-01 100.0% 68.5%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 4.37e-01 100.0% 79.0%
6at7B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.59 40.0 3.94e-01 70.1% 94.4%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 35.0 3.34e-01 100.0% 53.5%
1fx2A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 49.0 3.76e-01 100.0% 85.1%
1wc1C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 48.0 3.88e-01 96.9% 81.2%
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 47.0 3.77e-01 96.9% 78.5%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 31.0 3.24e-01 95.9% 61.4%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 32.0 3.25e-01 100.0% 58.4%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 46.0 3.37e-01 100.0% 65.1%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.45e-01 76.3% 88.7%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 29.0 3.12e-01 93.8% 62.4%
2lorA00 1.10.3350.20 Mainly Alpha › Orthogonal Bundle › HP0242-like fold › Tmem141 protein family 0.50 34.0 3.34e-01 70.1% 66.7%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 31.0 3.30e-01 89.7% 72.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3690781 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.92 60.0 6.12e-01 70.1% 68.4%
3207626 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.87 67.0 7.13e-01 97.9% 90.6%
3714105 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.80 75.0 5.85e-01 100.0% 52.1%
3596109 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.80 75.0 6.73e-01 100.0% 77.7%
4345162 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.79 74.0 6.12e-01 99.0% 79.4%
4261006 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.76 69.0 5.83e-01 99.0% 81.3%
4220398 304.48.1.11 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.73 67.0 5.53e-01 100.0% 70.6%
5049019 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.71 43.0 4.28e-01 100.0% 57.3%
3926567 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 41.0 3.92e-01 100.0% 58.2%
4261739 3068.2.1.1 ↗ a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C 0.61 37.0 3.63e-01 100.0% 52.7%
3492908 108.1.1.12 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › p25-alpha 0.61 40.0 3.73e-01 100.0% 51.2%
3423865 103.3.1.0 ↗ alpha arrays › RuvA-C › Tas3 C-terminal helical domains › Tas3 C-terminal helical domains 0.59 36.0 3.28e-01 86.6% 45.4%
5071804 242.4.1.2 ↗ a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central 0.55 27.0 2.80e-01 92.8% 46.7%
5045933 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 37.0 3.41e-01 100.0% 53.1%
147149 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.54 47.0 3.77e-01 96.9% 78.5%
3930358 1081.1.1.1 ↗ alpha arrays › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › hDGE_amylase 0.53 47.0 3.93e-01 100.0% 85.1%
3555108 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.53 40.0 2.59e-01 92.8% 16.1%
3478250 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 43.0 2.95e-01 89.7% 33.8%
3970001 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 30.0 3.19e-01 93.8% 62.2%
3962252 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 38.0 3.32e-01 93.8% 52.0%
3724216 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 41.0 2.97e-01 93.8% 36.3%