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NC_070840.1__YP_010656735.1__PP651_gp53__00034

Bact-Vir

NC_070840.1__YP_010656735.1__PP651_gp53__00034

Identity

Accession:
NC_070840 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chaseviridae› Shantouvirus› Aeromonas_phage_ZPAH14

TaxID: 2924887

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-98
PDB
Domain cluster: rep: MK203850.3__AZS06524.1__X__00021__D1-88
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13023.13 best HD_3 39.2 9.60e-10 91.8% 41.2%
PF12917.14 YfbR-like 34.5 2.40e-08 91.8% 46.2%
PF01966.29 HD 22.6 1.60e-04 71.4% 62.1%
D2 medium residues 99-172
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.82 68.0 5.37e-01 89.2% 65.7%
4ikhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 56.0 4.65e-01 82.4% 70.1%
5b1aH00 1.10.10.140 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb 0.72 53.0 5.19e-01 81.1% 72.2%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 54.0 4.79e-01 82.4% 100.0%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.69 50.0 4.48e-01 79.7% 55.4%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 52.0 4.98e-01 81.1% 76.5%
7smtA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.69 59.0 4.54e-01 97.3% 58.0%
2nwbA02 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 57.0 3.97e-01 90.5% 61.2%
2r7rA03 1.10.10.1990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Viral RNA-directed RNA polymerase, 4-helical domain 0.68 49.0 4.86e-01 81.1% 73.7%
1oedA00 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.67 53.0 4.56e-01 89.2% 74.0%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 54.0 4.45e-01 91.9% 63.4%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.67 56.0 4.77e-01 94.6% 68.3%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.66 50.0 4.84e-01 83.8% 100.0%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.66 51.0 4.62e-01 83.8% 73.0%
1c02A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.65 55.0 4.24e-01 91.9% 63.3%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.65 50.0 4.21e-01 85.1% 82.4%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 52.0 3.92e-01 86.5% 48.3%
1u3dA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 48.0 3.97e-01 81.1% 49.3%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.64 48.0 3.72e-01 81.1% 44.8%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.62 48.0 4.09e-01 87.8% 69.9%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.62 48.0 3.97e-01 87.8% 97.3%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 46.0 4.10e-01 82.4% 66.1%
5hxgB00 1.10.4000.10 Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD 0.59 41.0 4.38e-01 74.3% 83.1%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.58 39.0 3.68e-01 73.0% 57.1%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.58 45.0 4.17e-01 83.8% 78.7%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 4.40e-01 71.6% 100.0%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 51.0 4.50e-01 98.6% 88.7%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.57 43.0 3.66e-01 85.1% 64.4%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.53 40.0 4.05e-01 79.7% 88.9%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.51 39.0 3.73e-01 83.8% 98.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3505729 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 67.0 5.99e-01 86.5% 89.0%
3600827 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.80 65.0 5.57e-01 86.5% 85.2%
3308568 109.59.1.13 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › E_motif 0.76 52.0 4.92e-01 79.7% 61.2%
5067071 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.75 56.0 5.96e-01 79.7% 100.0%
3185860 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.74 57.0 6.04e-01 83.8% 92.3%
3507250 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 57.0 5.15e-01 85.1% 84.8%
5013258 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.73 58.0 4.91e-01 86.5% 72.0%
3522902 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.73 56.0 5.96e-01 83.8% 92.3%
3902035 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.73 54.0 5.74e-01 78.4% 89.2%
4107154 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.72 55.0 5.86e-01 83.8% 92.3%
3510163 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.72 59.0 5.17e-01 90.5% 84.5%
3509024 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 57.0 5.12e-01 87.8% 86.7%
4266291 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.71 56.0 5.52e-01 85.1% 77.5%
3360891 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.71 56.0 5.58e-01 83.8% 81.3%
5024095 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.71 61.0 4.27e-01 94.6% 81.3%
3996406 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.71 56.0 5.78e-01 87.8% 100.0%
4152571 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.70 54.0 5.43e-01 83.8% 81.3%
3277682 191.1.1.1 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.69 57.0 4.41e-01 90.5% 52.7%
5000174 601.16.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.68 54.0 4.87e-01 85.1% 77.0%
3721690 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 51.0 4.21e-01 79.7% 47.7%
3700131 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 50.0 5.48e-01 82.4% 100.0%
4937017 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.66 45.0 4.02e-01 70.3% 90.5%
3679873 109.4.1.90 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOM20_plant 0.66 52.0 4.04e-01 86.5% 62.0%
4999868 604.1.1.264 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Oxidored_q2 0.65 51.0 4.83e-01 86.5% 91.1%
3221809 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.65 45.0 4.96e-01 73.0% 98.3%
3275534 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 50.0 3.44e-01 86.5% 68.9%
4029940 604.5.1.44 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › EMC6 0.63 53.0 4.92e-01 93.2% 98.9%
3700109 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 49.0 3.58e-01 87.8% 39.0%
3283706 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.62 48.0 3.84e-01 82.4% 79.3%
3256919 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 54.0 4.48e-01 95.9% 86.4%
3679916 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.61 50.0 4.00e-01 91.9% 75.5%
4179237 6028.1.1.0 ↗ alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.61 46.0 4.86e-01 83.8% 96.9%
3785071 109.4.1.17 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.60 46.0 4.22e-01 83.8% 98.0%
5040686 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.58 44.0 2.88e-01 86.5% 47.4%
4050022 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.57 39.0 4.40e-01 71.6% 100.0%
4932254 3962.1.1.0 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.57 46.0 3.73e-01 89.2% 69.0%
3877844 529.1.1.2 ↗ few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.56 45.0 4.19e-01 85.1% 75.6%
5064803 607.1.1.1 ↗ alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N 0.55 39.0 3.30e-01 73.0% 56.0%
4145773 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.55 39.0 4.36e-01 75.7% 100.0%
3330299 4070.1.1.4 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.55 47.0 3.30e-01 94.6% 79.5%