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NC_070843.1__YP_010657106.1__PP655_gp082__00082
Bact-VirNC_070843.1__YP_010657106.1__PP655_gp082__00082
Identity
- Accession:
- NC_070843 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
TaxID: 1675028
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-81
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 52.0 | 5.24e-01 | 100.0% | 76.8% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 56.0 | 5.75e-01 | 100.0% | 92.2% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 47.0 | 4.74e-01 | 71.0% | 73.5% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.65 | 49.0 | 4.75e-01 | 100.0% | 73.3% |
| 1jkfA03 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 41.0 | 4.34e-01 | 94.2% | 73.3% |
| 2gaiA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.63 | 54.0 | 4.48e-01 | 95.7% | 74.0% |
| 3htnB00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.63 | 52.0 | 4.17e-01 | 100.0% | 46.0% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 46.0 | 3.86e-01 | 82.6% | 50.0% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 36.0 | 3.78e-01 | 94.2% | 66.7% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 50.0 | 3.61e-01 | 92.8% | 64.3% |
| 5ixgA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.59 | 46.0 | 3.52e-01 | 85.5% | 96.4% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.59 | 47.0 | 4.35e-01 | 100.0% | 66.7% |
| 4gl6A01 | 3.10.450.570 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain | 0.58 | 51.0 | 4.78e-01 | 97.1% | 80.5% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 36.0 | 3.50e-01 | 87.0% | 55.1% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 44.0 | 3.62e-01 | 85.5% | 76.7% |
| 4gxbA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 44.0 | 4.02e-01 | 94.2% | 85.6% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 47.0 | 3.94e-01 | 92.8% | 88.7% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 46.0 | 3.65e-01 | 92.8% | 91.2% |
| 2y1sA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.55 | 41.0 | 3.56e-01 | 94.2% | 50.9% |
| 1m4zA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 47.0 | 3.46e-01 | 100.0% | 46.9% |
| 1st8A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 41.0 | 2.64e-01 | 81.2% | 94.6% |
| 2bi0A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 44.0 | 3.53e-01 | 94.2% | 86.3% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 46.0 | 3.80e-01 | 97.1% | 86.7% |
| 2qkpD00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 43.0 | 3.51e-01 | 88.4% | 79.1% |
| 2x8fA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 44.0 | 2.90e-01 | 95.7% | 27.7% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 39.0 | 3.59e-01 | 78.3% | 77.5% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 36.0 | 3.10e-01 | 72.5% | 88.1% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.53 | 44.0 | 4.30e-01 | 100.0% | 84.2% |
| 2mcfA00 | 3.40.50.11630 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 3.38e-01 | 91.3% | 95.3% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.52 | 40.0 | 3.38e-01 | 97.1% | 48.8% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.24e-01 | 95.7% | 78.5% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 42.0 | 3.14e-01 | 92.8% | 93.5% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.75e-01 | 95.7% | 78.6% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.51 | 43.0 | 3.04e-01 | 98.6% | 30.9% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 39.0 | 3.16e-01 | 88.4% | 64.9% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2157301 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.76 | 59.0 | 5.85e-01 | 100.0% | 79.5% |
| 3271234 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 46.0 | 5.61e-01 | 97.1% | 97.8% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.73 | 53.0 | 5.31e-01 | 100.0% | 75.7% |
| 3643549 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.72 | 52.0 | 4.96e-01 | 100.0% | 66.3% |
| 3399965 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 53.0 | 4.82e-01 | 100.0% | 61.1% |
| 4931072 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.70 | 51.0 | 5.09e-01 | 100.0% | 75.7% |
| 3908789 | 4.1.1.354 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 | 0.70 | 62.0 | 4.04e-01 | 100.0% | 23.9% |
| 3297966 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.68 | 61.0 | 5.07e-01 | 100.0% | 74.2% |
| 4950455 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 54.0 | 5.42e-01 | 95.7% | 85.7% |
| 3177469 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 5.17e-01 | 100.0% | 82.9% |
| 3383638 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.66 | 59.0 | 4.60e-01 | 100.0% | 75.3% |
| 3465486 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.65 | 59.0 | 4.34e-01 | 100.0% | 79.4% |
| 3423907 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.65 | 58.0 | 4.38e-01 | 100.0% | 78.8% |
| 3342228 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.64 | 57.0 | 4.30e-01 | 100.0% | 78.8% |
| 3833618 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.64 | 57.0 | 4.49e-01 | 100.0% | 80.0% |
| 4952193 | 223.1.1.49 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HK-GC-Chemotax_sensor | 0.64 | 38.0 | 2.59e-01 | 81.2% | 15.4% |
| 3842361 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.64 | 56.0 | 5.05e-01 | 100.0% | 74.7% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.63 | 49.0 | 4.74e-01 | 100.0% | 73.8% |
| 3662009 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.63 | 56.0 | 4.47e-01 | 100.0% | 79.3% |
| 3341337 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.63 | 57.0 | 4.23e-01 | 100.0% | 82.4% |
| 3650798 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 57.0 | 4.78e-01 | 100.0% | 65.2% |
| 3869065 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 53.0 | 4.69e-01 | 100.0% | 65.0% |
| 3870119 | 2.1.1.119 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB | 0.62 | 51.0 | 3.82e-01 | 88.4% | 64.2% |
| 4335022 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 4.75e-01 | 100.0% | 68.4% |
| 3645007 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.62 | 52.0 | 4.83e-01 | 94.2% | 72.9% |
| 4968862 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 40.0 | 4.52e-01 | 92.8% | 100.0% |
| 4988502 | 375.1.1.298 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM | 0.62 | 36.0 | 4.14e-01 | 89.9% | 86.7% |
| 3464303 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.61 | 55.0 | 4.24e-01 | 100.0% | 81.3% |
| 3764452 | 4.8.1.41 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF4708 | 0.61 | 57.0 | 4.63e-01 | 100.0% | 64.2% |
| 1144777 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.61 | 46.0 | 4.02e-01 | 81.2% | 65.4% |
| 5025236 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.61 | 50.0 | 4.12e-01 | 100.0% | 49.6% |
| 3400775 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 47.0 | 3.97e-01 | 89.9% | 79.2% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 3.96e-01 | 100.0% | 53.6% |
| 4991994 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 41.0 | 4.49e-01 | 94.2% | 92.7% |
| 4935901 | 2.1.1.382 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 | 0.58 | 45.0 | 4.14e-01 | 82.6% | 95.5% |
| 3720671 | 222.1.1.27 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 | 0.58 | 46.0 | 3.55e-01 | 92.8% | 82.8% |
| 3249352 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.58 | 51.0 | 4.18e-01 | 100.0% | 57.7% |
| 4028378 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.57 | 51.0 | 4.16e-01 | 100.0% | 58.5% |
| 4517543 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.57 | 50.0 | 4.17e-01 | 100.0% | 60.8% |
| 3304525 | 4.1.1.173 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4216 | 0.57 | 49.0 | 4.26e-01 | 100.0% | 80.0% |
| 4995812 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.57 | 47.0 | 4.14e-01 | 89.9% | 93.0% |
| 5077103 | 5.1.11.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › PQQ_2 | 0.57 | 47.0 | 2.91e-01 | 95.7% | 23.7% |
| 4932882 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.56 | 50.0 | 4.02e-01 | 100.0% | 57.0% |
| 3838288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 49.0 | 4.14e-01 | 98.6% | 90.4% |
| 3382312 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.55 | 44.0 | 2.95e-01 | 88.4% | 23.9% |
| 3932783 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.55 | 47.0 | 3.07e-01 | 94.2% | 95.9% |
| 3496857 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 48.0 | 4.24e-01 | 100.0% | 80.0% |
| 5061147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 4.10e-01 | 100.0% | 66.3% |
| 3676791 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 44.0 | 4.35e-01 | 88.4% | 85.3% |
| 3368743 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 41.0 | 4.34e-01 | 88.4% | 93.3% |
| 4096366 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.55 | 45.0 | 3.72e-01 | 91.3% | 93.6% |
| 3928239 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.55 | 47.0 | 3.08e-01 | 95.7% | 95.0% |
| 3928323 | 4.27.1.1 ↗ | beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 | 0.54 | 45.0 | 3.32e-01 | 100.0% | 33.7% |
| 3631673 | 222.1.1.27 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 | 0.53 | 43.0 | 3.27e-01 | 92.8% | 83.3% |
| 3941021 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.53 | 44.0 | 2.94e-01 | 94.2% | 96.6% |
| 3678038 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.52 | 35.0 | 3.48e-01 | 71.0% | 69.3% |
| 3241172 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.52 | 43.0 | 3.75e-01 | 97.1% | 87.0% |
| 3285693 | 222.1.1.7 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FcoT | 0.52 | 43.0 | 3.27e-01 | 94.2% | 75.1% |
| 4945537 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 42.0 | 3.56e-01 | 91.3% | 90.0% |
| 3328840 | 284.1.2.0 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases | 0.52 | 43.0 | 3.99e-01 | 98.6% | 72.9% |
| 3460252 | 109.54.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 | 0.51 | 45.0 | 2.73e-01 | 100.0% | 62.3% |
| 3652009 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 41.0 | 3.42e-01 | 92.8% | 82.3% |
| 1789717 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.50 | 37.0 | 3.69e-01 | 92.8% | 78.6% |