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NC_070844.1__YP_010657225.1__PP656_gp051__00078

Bact-Vir

NC_070844.1__YP_010657225.1__PP656_gp051__00078

Identity

Accession:
NC_070844 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-54
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 49.0 3.87e-01 100.0% 34.8%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.67 53.0 4.10e-01 90.2% 94.0%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 42.0 3.03e-01 92.2% 22.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.59e-01 92.2% 35.5%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.63 42.0 3.89e-01 72.5% 90.1%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 45.0 3.12e-01 78.4% 37.9%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 3.89e-01 100.0% 69.5%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 41.0 2.81e-01 70.6% 44.2%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 45.0 3.47e-01 84.3% 98.4%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 3.18e-01 98.0% 28.9%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 39.0 3.72e-01 92.2% 54.7%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.59 39.0 3.65e-01 92.2% 53.8%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.58 38.0 3.70e-01 90.2% 59.6%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 3.91e-01 98.0% 57.9%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.58 48.0 3.27e-01 94.1% 51.1%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 44.0 2.94e-01 100.0% 19.2%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 4.17e-01 100.0% 67.2%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.76e-01 100.0% 63.7%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.57 45.0 3.46e-01 90.2% 83.2%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 35.0 3.89e-01 88.2% 82.1%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.57 46.0 3.80e-01 94.1% 70.4%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.57 40.0 3.25e-01 86.3% 37.9%
3zfvA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 3.42e-01 100.0% 34.6%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.39e-01 100.0% 34.6%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 49.0 3.83e-01 100.0% 68.5%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 2.78e-01 98.0% 23.7%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 46.0 3.43e-01 92.2% 53.4%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 39.0 2.89e-01 100.0% 25.9%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.54 38.0 3.05e-01 100.0% 34.5%
6bjqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 33.0 2.76e-01 88.2% 34.1%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.61e-01 94.1% 66.7%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 45.0 2.83e-01 100.0% 31.9%
1nf3C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 45.0 3.47e-01 100.0% 45.5%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.53 43.0 2.88e-01 100.0% 25.6%
2uxwA03 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.53 37.0 2.99e-01 84.3% 33.9%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 3.65e-01 98.0% 58.6%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 3.50e-01 94.1% 59.4%
1rm6A03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 39.0 3.00e-01 100.0% 32.6%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.52 41.0 2.99e-01 92.2% 36.0%
4mb8D00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.51 41.0 2.69e-01 100.0% 24.8%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 39.0 3.29e-01 92.2% 75.5%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.51 41.0 2.76e-01 100.0% 74.9%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.50 40.0 3.21e-01 96.1% 41.0%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.50 39.0 3.25e-01 92.2% 72.4%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 43.0 3.37e-01 100.0% 50.0%
1r4sA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.50 40.0 2.59e-01 98.0% 32.7%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4197190 812.1.1.1 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.71 50.0 4.75e-01 72.5% 61.7%
3693076 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.69 53.0 3.80e-01 100.0% 28.7%
3342167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 47.0 3.32e-01 100.0% 22.4%
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.68 48.0 4.46e-01 94.1% 58.5%
3342304 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 47.0 3.38e-01 100.0% 24.5%
3264140 3082.1.1.0 extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 0.68 45.0 4.96e-01 84.3% 100.0%
139759 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.67 47.0 3.71e-01 100.0% 33.6%
3503534 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.67 54.0 3.88e-01 88.2% 66.2%
3227845 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 48.0 2.92e-01 80.4% 22.7%
4301874 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.65 52.0 3.14e-01 100.0% 12.4%
4453447 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.65 45.0 3.50e-01 96.1% 31.7%
5013672 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 49.0 4.62e-01 98.0% 66.2%
3784766 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 55.0 3.28e-01 100.0% 12.7%
4966859 304.51.1.8 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C 0.64 55.0 4.80e-01 100.0% 64.0%
3717243 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.24e-01 98.0% 20.5%
3224729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 51.0 4.40e-01 100.0% 91.6%
4309280 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.62 52.0 3.94e-01 100.0% 40.0%
4029236 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.61 48.0 3.50e-01 92.2% 75.8%
5016315 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.61 42.0 3.26e-01 100.0% 30.4%
2494924 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.61 48.0 4.25e-01 100.0% 59.0%
3649484 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.61 53.0 3.74e-01 100.0% 42.5%
4022793 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 3.72e-01 100.0% 68.2%
3742122 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 3.62e-01 100.0% 63.0%
3222288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 51.0 3.96e-01 100.0% 73.0%
5035282 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 41.0 3.26e-01 100.0% 32.8%
5073695 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.58 41.0 3.39e-01 78.4% 76.0%
4844428 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 45.0 4.13e-01 100.0% 64.0%
3412116 206.1.1.88 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 0.58 46.0 2.80e-01 94.1% 22.6%
3967497 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.58 43.0 2.64e-01 90.2% 45.1%
1233328 4.1.1.116 beta barrels › SH3 › SH3 › SH3 › SH3_14 0.57 45.0 3.60e-01 100.0% 68.5%
3956950 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.57 46.0 3.54e-01 100.0% 39.3%
4961941 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 45.0 2.72e-01 92.2% 12.1%
3255783 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 41.0 3.81e-01 98.0% 60.0%
3689675 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.56 40.0 3.55e-01 100.0% 49.4%
4089814 327.13.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.56 41.0 3.10e-01 88.2% 62.7%
4847872 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.55 43.0 3.37e-01 94.1% 37.9%
3412900 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 45.0 3.61e-01 98.0% 47.8%
4965094 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 42.0 3.23e-01 92.2% 36.4%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.55 39.0 3.43e-01 96.1% 47.1%
4019707 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.04e-01 90.2% 72.9%
4156749 3234.1.1.2 a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.54 46.0 2.93e-01 100.0% 18.9%
4965879 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.54 46.0 3.18e-01 100.0% 82.2%
3248736 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 42.0 3.77e-01 100.0% 57.5%
3986836 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.54 39.0 3.90e-01 92.2% 72.7%
5070432 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.54 41.0 2.90e-01 86.3% 47.2%
3251228 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.35e-01 100.0% 37.9%
3255418 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.54 44.0 2.71e-01 100.0% 41.8%
3799677 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.54 42.0 2.73e-01 92.2% 38.6%
4944561 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.53 36.0 3.03e-01 70.6% 75.0%
3508011 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.53 41.0 3.54e-01 100.0% 84.8%
4546371 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.53 37.0 3.00e-01 100.0% 33.3%
3436820 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.53 44.0 3.16e-01 100.0% 60.6%
5030377 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 45.0 3.41e-01 98.0% 76.9%
4464668 230.1.1.4 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › FolB 0.52 44.0 3.46e-01 100.0% 80.8%
3993949 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.52 38.0 3.96e-01 88.2% 88.9%
3448841 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.67e-01 96.1% 97.5%
4972327 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.52 39.0 3.41e-01 100.0% 49.5%
4003274 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.52 42.0 2.83e-01 100.0% 89.0%
3663237 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.39e-01 94.1% 53.8%
5075588 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.51 36.0 3.10e-01 76.5% 68.9%
3204359 11.1.5.59 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.51 41.0 3.17e-01 100.0% 95.2%
3588483 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 43.0 3.31e-01 100.0% 49.3%
3915626 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 43.0 3.61e-01 100.0% 71.6%
3621500 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.66e-01 98.0% 88.2%
3956879 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.50 41.0 2.92e-01 100.0% 35.9%
3226974 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.16e-01 100.0% 39.2%