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NC_070844.1__YP_010657244.1__PP656_gp032__00097

Bact-Vir

NC_070844.1__YP_010657244.1__PP656_gp032__00097

Identity

Accession:
NC_070844 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yihwangvirus› Bacillus_phage_pW4

TaxID: 2500560

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-102
PDB
Domain cluster: rep: MK448516.1__QBX10840.1__JavanS490_0006__00006__D2-76
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.72 57.0 5.70e-01 84.5% 94.1%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.68 54.0 5.24e-01 85.6% 87.7%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.55 27.0 2.93e-01 94.8% 52.9%
3h9mA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.52 45.0 3.07e-01 100.0% 77.4%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.72e-01 85.6% 81.8%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 42.0 3.76e-01 93.8% 91.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.81 75.0 7.32e-01 100.0% 91.4%
1790169 101.1.9.7 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Baculo_PEP_N 0.77 73.0 7.04e-01 100.0% 92.5%
4032453 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.73 60.0 6.07e-01 87.6% 100.0%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.73 57.0 5.61e-01 83.5% 89.5%
4033119 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.73 59.0 5.85e-01 85.6% 88.0%
4008588 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.72 57.0 5.51e-01 84.5% 93.6%
3947416 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.71 63.0 6.02e-01 95.9% 96.4%
3941747 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.69 60.0 5.78e-01 95.9% 99.1%
3480621 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 54.0 5.48e-01 83.5% 96.8%
4003595 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.68 53.0 4.87e-01 83.5% 70.5%
3932937 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.68 54.0 5.52e-01 85.6% 97.9%
3888996 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.68 54.0 5.49e-01 85.6% 97.9%
3525074 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.68 52.0 5.43e-01 82.5% 100.0%
3893451 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.68 53.0 5.21e-01 84.5% 88.6%
3619623 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.67 41.0 4.94e-01 84.5% 92.3%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.66 58.0 5.07e-01 100.0% 91.3%
3516620 101.1.9.107 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867 0.64 49.0 4.97e-01 81.4% 100.0%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 49.0 4.54e-01 95.9% 85.6%
4977841 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.53 30.0 3.26e-01 100.0% 66.3%
3614494 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 40.0 3.02e-01 84.5% 56.9%
5057035 101.1.9.151 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Zn_ribbon_TFIIB 0.51 36.0 3.76e-01 75.3% 100.0%
3601759 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.71e-01 81.4% 94.0%
D2 high residues 116-165
PDB
Domain cluster: representative