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NC_070852.1__YP_010657967.1__PP745_gp058__00058

Bact-Vir

NC_070852.1__YP_010657967.1__PP745_gp058__00058

Identity

Accession:
NC_070852 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Cyamitesvirus› Rhizobium_phage_RHph_I1_6

TaxID: 2509728

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-108
PDB
Domain cluster: rep: MT310865.1__QJD50929.1__SEA_BMOC_220__00179__D6-79
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.78 45.0 5.28e-01 78.6% 83.6%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.75 42.0 5.22e-01 76.5% 90.0%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.70 46.0 5.36e-01 78.6% 93.0%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.69 38.0 4.79e-01 75.5% 96.2%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 47.0 5.17e-01 79.6% 87.3%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.68 45.0 3.97e-01 100.0% 46.9%
5jm6A02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.66 49.0 4.36e-01 79.6% 76.9%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.65 49.0 3.58e-01 81.6% 79.6%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.62 36.0 3.44e-01 78.6% 47.4%
1wktA00 2.60.20.20 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.62 32.0 3.35e-01 78.6% 54.5%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.61 48.0 4.43e-01 83.7% 96.8%
4dyoA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.60 48.0 4.23e-01 83.7% 76.3%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.60 40.0 3.61e-01 81.6% 48.9%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 36.0 3.45e-01 81.6% 51.3%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.58 42.0 3.30e-01 80.6% 33.3%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 34.0 3.43e-01 84.7% 56.4%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.72e-01 89.8% 58.3%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 32.0 3.03e-01 81.6% 44.1%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.20e-01 80.6% 57.5%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 36.0 2.99e-01 76.5% 36.3%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 32.0 3.02e-01 84.7% 44.8%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 32.0 3.17e-01 83.7% 53.5%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.54 40.0 3.25e-01 78.6% 65.8%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.55e-01 74.5% 65.0%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 37.0 3.10e-01 76.5% 39.7%
2zaiA04 2.60.40.3030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.60e-01 78.6% 66.7%
3rb5A02 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.53 31.0 2.92e-01 84.7% 44.0%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 35.0 3.23e-01 80.6% 51.1%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 41.0 2.74e-01 86.7% 67.6%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 3.21e-01 80.6% 57.8%
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.18e-01 80.6% 58.2%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 38.0 3.42e-01 81.6% 95.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.75 49.0 5.70e-01 78.6% 92.9%
2106284 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.74 48.0 5.61e-01 80.6% 95.5%
3259237 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 53.0 5.75e-01 82.7% 100.0%
3280008 3115.1.1.2 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.67 53.0 5.55e-01 94.9% 92.2%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.66 41.0 4.83e-01 79.6% 95.4%
5033281 304.100.1.1 ↗ a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.66 43.0 5.03e-01 78.6% 100.0%
3338688 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 38.0 4.60e-01 70.4% 87.7%
4332626 3532.1.1.0 ↗ alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase 0.65 51.0 3.10e-01 100.0% 13.8%
4128974 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 49.0 5.32e-01 98.0% 100.0%
3939070 11.1.1.1173 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7757 0.61 40.0 3.70e-01 83.7% 52.8%
3350520 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.61 44.0 2.98e-01 100.0% 19.2%
3519901 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.59 47.0 3.93e-01 84.7% 90.9%
3577792 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.59 39.0 3.66e-01 82.7% 55.0%
3280259 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 38.0 4.07e-01 90.8% 77.1%
3220055 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.58 41.0 3.72e-01 84.7% 54.6%
5034847 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 37.0 3.57e-01 82.7% 55.7%
5078649 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.57 43.0 3.39e-01 79.6% 74.0%
3448678 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 39.0 3.48e-01 81.6% 48.3%
5029082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 48.0 4.11e-01 96.9% 75.3%
3291129 3370.1.1.0 ↗ beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 0.57 40.0 4.20e-01 80.6% 82.0%
3507557 4081.1.1.11 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › CreD 0.56 49.0 3.67e-01 93.9% 92.8%
3702482 2492.1.1.34 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › LmjF365940-deam 0.56 40.0 3.37e-01 81.6% 41.7%
4350613 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.56 39.0 3.90e-01 74.5% 68.6%
3999001 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.56 39.0 3.82e-01 79.6% 66.7%
4003316 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.56 39.0 3.58e-01 81.6% 56.0%
3237716 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 40.0 3.55e-01 82.7% 52.9%
3260499 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.57e-01 78.6% 59.2%
3382614 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 40.0 2.56e-01 80.6% 37.4%
3212872 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 32.0 3.12e-01 83.7% 49.6%
3220586 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.54 38.0 3.92e-01 84.7% 80.0%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 40.0 3.72e-01 86.7% 62.3%
3220909 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 42.0 3.91e-01 85.7% 69.2%
4943952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.05e-01 82.7% 44.3%
3938345 11.1.1.909 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Gpi16 0.52 36.0 3.23e-01 77.6% 50.7%
3237337 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 35.0 3.19e-01 81.6% 52.3%
3619496 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 2.97e-01 100.0% 25.0%