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NC_070852.1__YP_010657998.1__PP745_gp099__00089

Bact-Vir

NC_070852.1__YP_010657998.1__PP745_gp099__00089

Identity

Accession:
NC_070852 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Cyamitesvirus› Rhizobium_phage_RHph_I1_6

TaxID: 2509728

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-65
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 3.05e-01 71.4% 36.8%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.11e-01 77.6% 36.4%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 2.89e-01 71.4% 35.6%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 2.92e-01 77.6% 35.9%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 40.0 3.92e-01 77.6% 96.2%
2qpwA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.55 43.0 3.36e-01 95.9% 100.0%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 2.77e-01 71.4% 37.3%
4k3bA05 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 38.0 3.41e-01 79.6% 92.4%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 2.80e-01 77.6% 36.0%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 2.80e-01 73.5% 37.9%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 2.80e-01 77.6% 37.3%
4wctA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 35.0 2.33e-01 73.5% 58.5%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 2.67e-01 77.6% 33.1%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 2.77e-01 79.6% 35.5%
1xdpA02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.51 37.0 2.53e-01 81.6% 49.0%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 2.72e-01 77.6% 36.8%
2o8rB02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.51 35.0 2.59e-01 75.5% 47.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704361 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 43.0 2.57e-01 73.5% 14.4%
4049690 206.1.1.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo 0.61 48.0 3.13e-01 93.9% 26.5%
4948522 3715.1.1.1 ↗ a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.59 43.0 3.68e-01 81.6% 98.9%
3945846 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.58 39.0 2.93e-01 73.5% 37.0%
None — 0.57 43.0 2.61e-01 83.7% 13.9%
3283408 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.57 41.0 3.08e-01 75.5% 43.9%
5060218 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 40.0 3.30e-01 73.5% 51.8%
3710828 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.56 46.0 3.44e-01 95.9% 55.1%
3604261 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 3.45e-01 81.6% 77.6%
4033334 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 39.0 2.83e-01 77.6% 34.5%
166543 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.54 36.0 2.66e-01 71.4% 30.9%
2808316 2004.1.1.122 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IIGP 0.53 38.0 2.25e-01 75.5% 13.4%
1746028 7581.1.1.7 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C 0.53 39.0 2.40e-01 81.6% 12.0%
3171331 2498.1.1.61 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › HRXXH 0.52 40.0 2.87e-01 95.9% 77.9%
3369773 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.63e-01 81.6% 78.0%
3978199 2484.1.1.248 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GpA_nuclease 0.50 34.0 2.31e-01 73.5% 87.1%