←Back to structures
NC_070857.1__YP_010658448.1__PP751_gp044__00044
Bact-VirNC_070857.1__YP_010658448.1__PP751_gp044__00044
Identity
- Accession:
- NC_070857 ↗
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Xoxocotlavirus›
Rhizobium_phage_RHph_X2_28B
TaxID: 2836086
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-96
Domain cluster:
representative
CATH (73)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.92 | 61.0 | 6.91e-01 | 80.8% | 86.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.88 | 71.0 | 7.16e-01 | 83.3% | 92.2% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.85 | 67.0 | 5.82e-01 | 82.1% | 62.5% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.84 | 61.0 | 6.57e-01 | 80.8% | 90.8% |
| 1qu7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.83 | 64.0 | 4.52e-01 | 82.1% | 51.5% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.83 | 60.0 | 6.57e-01 | 75.6% | 95.3% |
| 3tulB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.82 | 63.0 | 5.22e-01 | 82.1% | 57.1% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 59.0 | 5.25e-01 | 74.4% | 62.5% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 63.0 | 4.91e-01 | 82.1% | 56.0% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.81 | 64.0 | 4.95e-01 | 83.3% | 40.4% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 62.0 | 6.16e-01 | 82.1% | 80.2% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.80 | 60.0 | 5.24e-01 | 80.8% | 54.4% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 55.0 | 5.57e-01 | 71.8% | 73.1% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 53.0 | 5.33e-01 | 74.4% | 67.5% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 69.0 | 4.74e-01 | 93.6% | 78.0% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 61.0 | 5.01e-01 | 83.3% | 50.0% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 59.0 | 6.53e-01 | 79.5% | 100.0% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 59.0 | 5.45e-01 | 80.8% | 87.9% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 47.0 | 4.17e-01 | 74.4% | 44.4% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.77 | 54.0 | 6.05e-01 | 73.1% | 100.0% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 60.0 | 5.53e-01 | 84.6% | 65.7% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 53.0 | 5.97e-01 | 71.8% | 93.3% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.76 | 58.0 | 6.00e-01 | 79.5% | 91.8% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 53.0 | 5.80e-01 | 73.1% | 93.8% |
| 2ch7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.76 | 59.0 | 3.90e-01 | 83.3% | 21.0% |
| 4dylA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.76 | 64.0 | 4.41e-01 | 91.0% | 74.4% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.76 | 65.0 | 4.46e-01 | 93.6% | 77.1% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.76 | 59.0 | 5.50e-01 | 89.7% | 67.0% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 53.0 | 4.96e-01 | 73.1% | 60.0% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.75 | 61.0 | 4.40e-01 | 88.5% | 31.9% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.75 | 56.0 | 5.58e-01 | 83.3% | 75.3% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.75 | 57.0 | 6.29e-01 | 80.8% | 100.0% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.74 | 58.0 | 5.37e-01 | 84.6% | 66.3% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 50.0 | 5.21e-01 | 83.3% | 75.3% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.74 | 59.0 | 3.66e-01 | 84.6% | 28.5% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.74 | 56.0 | 4.50e-01 | 89.7% | 43.4% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.74 | 57.0 | 4.89e-01 | 83.3% | 53.2% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.73 | 56.0 | 4.20e-01 | 80.8% | 85.8% |
| 3t98B00 | 6.10.140.1350 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 55.0 | 5.37e-01 | 80.8% | 72.1% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.73 | 51.0 | 4.48e-01 | 73.1% | 53.0% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 55.0 | 4.74e-01 | 80.8% | 52.8% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.73 | 61.0 | 4.54e-01 | 93.6% | 77.1% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 56.0 | 5.18e-01 | 83.3% | 65.3% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 52.0 | 5.33e-01 | 75.6% | 77.6% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 53.0 | 5.33e-01 | 80.8% | 76.5% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.72 | 55.0 | 4.15e-01 | 82.1% | 34.8% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 55.0 | 5.71e-01 | 83.3% | 90.1% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.71 | 58.0 | 5.87e-01 | 89.7% | 89.6% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 58.0 | 5.25e-01 | 89.7% | 64.8% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.71 | 54.0 | 3.47e-01 | 83.3% | 19.7% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 54.0 | 5.24e-01 | 83.3% | 76.7% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.71 | 51.0 | 4.06e-01 | 75.6% | 67.1% |
| 1zbtA01 | 6.10.140.1950 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 54.0 | 5.32e-01 | 92.3% | 75.9% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 50.0 | 5.18e-01 | 74.4% | 87.3% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.70 | 53.0 | 4.04e-01 | 82.1% | 89.7% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.70 | 61.0 | 5.41e-01 | 96.2% | 71.2% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.69 | 49.0 | 5.03e-01 | 75.6% | 85.5% |
| 4ke2A00 | 6.10.140.1860 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 61.0 | 4.52e-01 | 97.4% | 68.4% |
| 1w9rA00 | 1.20.58.440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A | 0.68 | 51.0 | 4.45e-01 | 80.8% | 62.2% |
| 1s35A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 55.0 | 5.06e-01 | 89.7% | 69.3% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.67 | 57.0 | 5.83e-01 | 92.3% | 98.6% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 50.0 | 5.08e-01 | 80.8% | 89.7% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 55.0 | 4.95e-01 | 93.6% | 66.4% |
| 2oauA01 | 1.10.287.1260 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 49.0 | 4.54e-01 | 89.7% | 62.7% |
| 3h1nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 49.0 | 4.27e-01 | 82.1% | 55.0% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.64 | 48.0 | 4.82e-01 | 82.1% | 80.2% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 45.0 | 4.11e-01 | 80.8% | 54.1% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 52.0 | 4.19e-01 | 93.6% | 79.2% |
| 5dqqA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.62 | 45.0 | 3.92e-01 | 78.2% | 48.4% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 43.0 | 4.43e-01 | 85.9% | 77.0% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 48.0 | 4.76e-01 | 91.0% | 89.0% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.58 | 44.0 | 3.68e-01 | 83.3% | 73.8% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 42.0 | 3.59e-01 | 91.0% | 46.3% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3409209 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.92 | 73.0 | 6.11e-01 | 82.1% | 58.3% |
| 4345467 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.90 | 71.0 | 4.25e-01 | 82.1% | 14.3% |
| 3470680 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.90 | 71.0 | 4.30e-01 | 82.1% | 81.0% |
| 3837413 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.90 | 64.0 | 4.96e-01 | 73.1% | 40.7% |
| 3592972 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.89 | 69.0 | 4.99e-01 | 80.8% | 49.7% |
| 5057328 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.89 | 70.0 | 4.25e-01 | 82.1% | 16.9% |
| 4001186 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.89 | 70.0 | 5.08e-01 | 82.1% | 36.8% |
| 3184698 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.89 | 71.0 | 6.72e-01 | 83.3% | 78.9% |
| 3476331 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.88 | 69.0 | 5.77e-01 | 82.1% | 63.2% |
| 3942242 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.88 | 69.0 | 5.54e-01 | 82.1% | 51.4% |
| 4992667 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.88 | 68.0 | 4.49e-01 | 80.8% | 96.4% |
| 4106620 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.88 | 71.0 | 7.26e-01 | 84.6% | 96.0% |
| 149872 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.87 | 68.0 | 6.85e-01 | 82.1% | 88.6% |
| 4025271 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.87 | 62.0 | 5.59e-01 | 73.1% | 61.0% |
| 5010298 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.87 | 77.0 | 5.90e-01 | 94.9% | 75.0% |
| 3505608 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.87 | 68.0 | 6.94e-01 | 82.1% | 98.7% |
| 4043561 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.87 | 68.0 | 5.94e-01 | 82.1% | 64.5% |
| 3804036 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.87 | 68.0 | 5.85e-01 | 82.1% | 56.5% |
| 4500653 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.87 | 68.0 | 5.31e-01 | 82.1% | 43.3% |
| 3780286 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.85 | 66.0 | 3.84e-01 | 82.1% | 11.2% |
| 3495507 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.85 | 67.0 | 5.08e-01 | 82.1% | 82.4% |
| 3595968 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.85 | 59.0 | 5.90e-01 | 82.1% | 70.0% |
| 3268765 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.84 | 70.0 | 4.82e-01 | 88.5% | 70.0% |
| 3737161 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.84 | 67.0 | 5.85e-01 | 83.3% | 60.9% |
| 3237264 | 3755.4.1.82 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Snf7 | 0.84 | 74.0 | 6.11e-01 | 93.6% | 67.7% |
| 3788539 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.83 | 65.0 | 4.01e-01 | 82.1% | 54.3% |
| 4020772 | 4207.1.1.64 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF30554 | 0.83 | 65.0 | 4.71e-01 | 83.3% | 33.7% |
| 4487944 | 605.1.1.131 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C | 0.83 | 60.0 | 6.52e-01 | 80.8% | 89.2% |
| 3732397 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.83 | 64.0 | 5.49e-01 | 82.1% | 70.0% |
| 5006936 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.82 | 66.0 | 7.16e-01 | 85.9% | 100.0% |
| 1879027 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.82 | 64.0 | 3.99e-01 | 82.1% | 27.0% |
| 3336964 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.82 | 63.0 | 4.27e-01 | 82.1% | 24.7% |
| 3694749 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 62.0 | 4.23e-01 | 82.1% | 24.7% |
| 3699468 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 63.0 | 4.56e-01 | 82.1% | 69.5% |
| 3829282 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.81 | 62.0 | 5.15e-01 | 82.1% | 51.9% |
| 4052416 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.81 | 59.0 | 5.94e-01 | 78.2% | 75.0% |
| 4214655 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.80 | 62.0 | 6.18e-01 | 82.1% | 97.5% |
| 3702347 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.80 | 62.0 | 4.69e-01 | 82.1% | 38.9% |
| 3577907 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.80 | 62.0 | 4.26e-01 | 83.3% | 29.8% |
| 3271303 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.79 | 67.0 | 4.55e-01 | 91.0% | 66.8% |
| 5073876 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.79 | 61.0 | 3.69e-01 | 82.1% | 19.1% |
| 3919840 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.78 | 59.0 | 4.19e-01 | 83.3% | 28.2% |
| 3632812 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.78 | 58.0 | 4.49e-01 | 83.3% | 36.5% |
| 4286197 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 61.0 | 6.11e-01 | 84.6% | 95.0% |
| 5042955 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.77 | 58.0 | 3.40e-01 | 83.3% | 10.6% |
| 3983042 | 3711.1.1.3 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Metal_resist | 0.77 | 58.0 | 5.56e-01 | 82.1% | 68.9% |
| 3258825 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.76 | 59.0 | 3.68e-01 | 82.1% | 24.1% |
| 4016292 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.75 | 60.0 | 4.98e-01 | 85.9% | 85.2% |
| 3181110 | 5086.1.1.110 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA | 0.75 | 58.0 | 5.49e-01 | 84.6% | 75.8% |
| 4011783 | 633.21.1.25 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF7598 | 0.75 | 64.0 | 5.04e-01 | 92.3% | 96.8% |
| 4976948 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.74 | 54.0 | 4.50e-01 | 83.3% | 43.6% |
| 3704098 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.74 | 55.0 | 4.28e-01 | 82.1% | 36.5% |
| 4008053 | 4168.1.1.7 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › PF26769 | 0.74 | 61.0 | 4.76e-01 | 89.7% | 42.4% |
| 4175269 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.74 | 64.0 | 3.91e-01 | 94.9% | 50.1% |
| 3712411 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.74 | 58.0 | 3.99e-01 | 83.3% | 95.2% |
| 4619538 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.74 | 55.0 | 4.82e-01 | 82.1% | 53.9% |
| 3403227 | 192.8.1.465 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 | 0.73 | 60.0 | 5.31e-01 | 88.5% | 62.7% |
| 3386594 | 3291.1.1.197 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MCPsignal | 0.73 | 60.0 | 5.46e-01 | 89.7% | 67.6% |
| 3551506 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.73 | 66.0 | 4.32e-01 | 97.4% | 69.7% |
| 3218862 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.73 | 58.0 | 4.57e-01 | 87.2% | 45.5% |
| 3477880 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.72 | 66.0 | 4.39e-01 | 98.7% | 73.1% |
| 3991023 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 58.0 | 5.40e-01 | 88.5% | 90.0% |
| 3391109 | 3684.1.1.21 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › TMEM138 | 0.71 | 57.0 | 4.68e-01 | 85.9% | 67.1% |
| 5083776 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 53.0 | 4.95e-01 | 78.2% | 64.2% |
| 3494616 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.70 | 49.0 | 4.81e-01 | 80.8% | 68.2% |
| 3714314 | 601.41.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › C-terminal domain in uncharacterized DUF3829-like protein › C-terminal domain in uncharacterized DUF3829-like protein | 0.69 | 57.0 | 4.34e-01 | 88.5% | 39.4% |
| 3687766 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 53.0 | 3.85e-01 | 83.3% | 29.3% |
| 4954895 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.68 | 60.0 | 5.70e-01 | 94.9% | 100.0% |
| 4203309 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 54.0 | 3.38e-01 | 89.7% | 15.6% |
| 4000107 | 3567.1.1.122 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › BAR | 0.66 | 55.0 | 4.44e-01 | 94.9% | 46.9% |
| 3229124 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.65 | 57.0 | 4.59e-01 | 100.0% | 51.7% |
| 3697477 | 7581.1.1.7 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C | 0.64 | 55.0 | 3.63e-01 | 97.4% | 23.8% |
| 3507969 | 3755.3.1.420 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PTHB1_hp | 0.62 | 54.0 | 4.23e-01 | 100.0% | 86.9% |
| 4595635 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.54 | 46.0 | 3.80e-01 | 100.0% | 71.9% |
D2
high
residues 112-166
Domain cluster:
representative
CATH (61)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 60.0 | 6.28e-01 | 85.5% | 100.0% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 62.0 | 6.06e-01 | 92.7% | 88.3% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 60.0 | 5.78e-01 | 89.1% | 88.7% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 54.0 | 5.38e-01 | 80.0% | 86.2% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.72 | 61.0 | 5.15e-01 | 96.4% | 80.6% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 59.0 | 5.50e-01 | 92.7% | 95.6% |
| 3b79A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.71 | 61.0 | 4.75e-01 | 100.0% | 52.8% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 58.0 | 5.41e-01 | 92.7% | 88.7% |
| 6asoH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 56.0 | 4.91e-01 | 89.1% | 71.1% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 58.0 | 5.53e-01 | 96.4% | 87.9% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 56.0 | 5.41e-01 | 92.7% | 96.9% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 55.0 | 5.16e-01 | 90.9% | 93.0% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 55.0 | 4.86e-01 | 90.9% | 73.5% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 57.0 | 5.42e-01 | 96.4% | 86.4% |
| 1ljoA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 57.0 | 5.23e-01 | 96.4% | 92.0% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 57.0 | 5.61e-01 | 96.4% | 93.3% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 57.0 | 5.23e-01 | 96.4% | 93.2% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.96e-01 | 80.0% | 90.9% |
| 1b34B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 56.0 | 5.17e-01 | 98.2% | 89.2% |
| 2rsvA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.67 | 51.0 | 3.08e-01 | 85.5% | 25.3% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.42e-01 | 81.8% | 86.3% |
| 4xtvB02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 48.0 | 5.01e-01 | 81.8% | 95.8% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 51.0 | 4.35e-01 | 89.1% | 70.7% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 54.0 | 5.11e-01 | 98.2% | 81.2% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 51.0 | 5.08e-01 | 90.9% | 100.0% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 52.0 | 4.98e-01 | 92.7% | 80.3% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 4.84e-01 | 81.8% | 98.1% |
| 1f39A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.63 | 55.0 | 4.56e-01 | 100.0% | 54.5% |
| 2ktyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 47.0 | 3.67e-01 | 83.6% | 73.9% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 54.0 | 4.99e-01 | 98.2% | 79.5% |
| 1h3zA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 52.0 | 4.35e-01 | 100.0% | 63.9% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 4.95e-01 | 96.4% | 98.4% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 47.0 | 3.92e-01 | 89.1% | 59.3% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.61 | 46.0 | 3.24e-01 | 85.5% | 84.1% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 49.0 | 4.94e-01 | 94.5% | 100.0% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 47.0 | 4.65e-01 | 87.3% | 91.5% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.61 | 50.0 | 3.88e-01 | 96.4% | 81.2% |
| 2e6nA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.25e-01 | 100.0% | 53.8% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 46.0 | 4.06e-01 | 89.1% | 100.0% |
| 7dpyB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.59 | 47.0 | 4.19e-01 | 92.7% | 94.0% |
| 1wdiA02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.59 | 41.0 | 3.78e-01 | 81.8% | 56.2% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.58e-01 | 87.3% | 94.3% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 39.0 | 3.87e-01 | 81.8% | 66.7% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 4.49e-01 | 81.8% | 97.9% |
| 2gc9B00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 45.0 | 3.39e-01 | 92.7% | 84.5% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 47.0 | 4.15e-01 | 96.4% | 100.0% |
| 1bnkA00 | 3.10.300.10 | Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) | 0.56 | 45.0 | 3.24e-01 | 100.0% | 78.0% |
| 1mrzB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.56 | 47.0 | 3.83e-01 | 100.0% | 65.2% |
| 1sjgA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.55 | 42.0 | 3.51e-01 | 89.1% | 86.6% |
| 5h7jA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 44.0 | 3.67e-01 | 94.5% | 72.2% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.55 | 45.0 | 4.43e-01 | 100.0% | 100.0% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.55 | 45.0 | 3.25e-01 | 100.0% | 47.3% |
| 1vf7F01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.54 | 43.0 | 3.75e-01 | 100.0% | 100.0% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.54 | 43.0 | 3.85e-01 | 100.0% | 96.7% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 46.0 | 3.82e-01 | 98.2% | 94.9% |
| 3kl9A02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.53 | 42.0 | 3.94e-01 | 94.5% | 86.5% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 45.0 | 3.73e-01 | 100.0% | 88.5% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.53 | 41.0 | 4.03e-01 | 90.9% | 98.4% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.68e-01 | 100.0% | 61.2% |
| 2yvsA01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 45.0 | 3.55e-01 | 100.0% | 82.5% |
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 41.0 | 2.94e-01 | 100.0% | 71.3% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 167340 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.76 | 60.0 | 6.28e-01 | 85.5% | 100.0% |
| 4010995 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 63.0 | 5.65e-01 | 90.9% | 96.0% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 61.0 | 5.78e-01 | 90.9% | 81.5% |
| 4976701 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 59.0 | 6.22e-01 | 90.9% | 96.0% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 62.0 | 5.48e-01 | 94.5% | 81.2% |
| 5074749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 62.0 | 5.80e-01 | 96.4% | 81.4% |
| 5013683 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 60.0 | 5.87e-01 | 92.7% | 86.7% |
| 4058174 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.72 | 63.0 | 6.04e-01 | 100.0% | 93.8% |
| 4656461 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.72 | 63.0 | 6.19e-01 | 100.0% | 98.3% |
| 3704305 | 4.1.1.344 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31193 | 0.72 | 61.0 | 5.68e-01 | 96.4% | 94.3% |
| 4340758 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 61.0 | 5.62e-01 | 96.4% | 100.0% |
| 185067 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.71 | 61.0 | 4.75e-01 | 100.0% | 53.2% |
| 3591870 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 51.0 | 3.92e-01 | 78.2% | 94.6% |
| 3389662 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.71 | 58.0 | 5.11e-01 | 90.9% | 82.5% |
| 4228570 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 61.0 | 5.43e-01 | 100.0% | 95.0% |
| 3661025 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.70 | 56.0 | 4.43e-01 | 89.1% | 58.3% |
| 3978624 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.70 | 60.0 | 4.64e-01 | 100.0% | 50.0% |
| 3934628 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 59.0 | 5.14e-01 | 100.0% | 64.4% |
| 3769507 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.69 | 54.0 | 5.02e-01 | 87.3% | 81.4% |
| 4046385 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.69 | 59.0 | 4.47e-01 | 100.0% | 47.9% |
| 4073433 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 60.0 | 5.32e-01 | 100.0% | 91.3% |
| 4646501 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 56.0 | 4.10e-01 | 92.7% | 34.8% |
| 1120986 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.68 | 56.0 | 5.30e-01 | 92.7% | 94.0% |
| 3514191 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 61.0 | 4.97e-01 | 100.0% | 56.0% |
| 3227009 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.68 | 55.0 | 4.99e-01 | 90.9% | 80.0% |
| 3315166 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.67 | 54.0 | 4.69e-01 | 92.7% | 66.7% |
| 3420348 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.67 | 54.0 | 5.45e-01 | 90.9% | 96.4% |
| 3936053 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.67 | 54.0 | 5.04e-01 | 92.7% | 87.1% |
| 3910727 | 4.1.1.353 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 | 0.67 | 56.0 | 5.36e-01 | 98.2% | 100.0% |
| 3907619 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.66 | 56.0 | 4.85e-01 | 100.0% | 62.4% |
| 3723834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 54.0 | 5.00e-01 | 92.7% | 97.1% |
| 3570700 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.65 | 55.0 | 4.41e-01 | 98.2% | 52.2% |
| 3304627 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.65 | 52.0 | 5.21e-01 | 89.1% | 96.4% |
| 3231177 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.65 | 52.0 | 5.37e-01 | 89.1% | 100.0% |
| 3407855 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.64 | 54.0 | 4.73e-01 | 100.0% | 70.0% |
| 3603956 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.64 | 54.0 | 3.61e-01 | 98.2% | 83.4% |
| 4218142 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.64 | 55.0 | 4.56e-01 | 98.2% | 60.0% |
| 3702154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 50.0 | 4.60e-01 | 89.1% | 80.0% |
| 3920026 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.64 | 52.0 | 3.54e-01 | 92.7% | 24.8% |
| 3996278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 4.02e-01 | 90.9% | 64.2% |
| 3691144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.64 | 51.0 | 4.77e-01 | 90.9% | 95.7% |
| 3758536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 50.0 | 4.68e-01 | 90.9% | 87.1% |
| 3616243 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 51.0 | 5.16e-01 | 92.7% | 94.5% |
| 3570399 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 51.0 | 4.94e-01 | 98.2% | 95.4% |
| 3299797 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.62 | 47.0 | 4.61e-01 | 83.6% | 78.3% |
| 3447802 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.62 | 45.0 | 3.86e-01 | 78.2% | 67.8% |
| 3881111 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 54.0 | 4.62e-01 | 100.0% | 63.3% |
| 3619813 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.62 | 53.0 | 4.23e-01 | 100.0% | 50.4% |
| 3389311 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 51.0 | 4.35e-01 | 100.0% | 63.0% |
| 3858885 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.61e-01 | 83.6% | 98.2% |
| 3877478 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 52.0 | 4.37e-01 | 100.0% | 56.0% |
| 3586487 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.48e-01 | 98.2% | 64.7% |
| 3562168 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 52.0 | 4.48e-01 | 100.0% | 60.0% |
| 322770 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 51.0 | 4.25e-01 | 100.0% | 53.8% |
| 3484822 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.60 | 50.0 | 4.50e-01 | 98.2% | 80.0% |
| 4055256 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 50.0 | 4.36e-01 | 100.0% | 60.0% |
| 3795121 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.60 | 44.0 | 4.25e-01 | 81.8% | 70.8% |
| 171891 | 4.1.1.110 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 | 0.60 | 47.0 | 4.70e-01 | 89.1% | 92.7% |
| 4937158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 50.0 | 4.93e-01 | 100.0% | 95.0% |
| 3508415 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.59 | 51.0 | 3.93e-01 | 100.0% | 43.8% |
| 4606231 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.59 | 42.0 | 3.64e-01 | 78.2% | 71.0% |
| 3562166 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.58 | 49.0 | 3.25e-01 | 100.0% | 71.9% |
| 3558926 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 50.0 | 4.34e-01 | 100.0% | 63.3% |
| 3852545 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 4.62e-01 | 98.2% | 100.0% |
| 4197746 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 46.0 | 4.18e-01 | 100.0% | 81.2% |
| 4011239 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 46.0 | 4.24e-01 | 100.0% | 87.5% |
| 4080130 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 45.0 | 4.20e-01 | 100.0% | 93.3% |
| 5076995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 44.0 | 4.08e-01 | 100.0% | 87.5% |
| 3973332 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 45.0 | 4.20e-01 | 100.0% | 86.7% |
| 4975808 | 1.1.7.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 | 0.54 | 44.0 | 3.89e-01 | 98.2% | 100.0% |
| 4944162 | 1.1.7.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 | 0.53 | 43.0 | 3.81e-01 | 96.4% | 100.0% |
| 3277790 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.53 | 43.0 | 3.65e-01 | 100.0% | 93.3% |
| 4932859 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 42.0 | 3.53e-01 | 98.2% | 98.1% |
| 3512272 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 43.0 | 3.98e-01 | 100.0% | 92.0% |
| 3801941 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.51 | 41.0 | 3.40e-01 | 96.4% | 53.0% |
| 3945528 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 43.0 | 3.87e-01 | 100.0% | 86.3% |
D3
medium
residues 221-281