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NC_070857.1__YP_010658495.1__PP751_gp091__00091
Bact-VirNC_070857.1__YP_010658495.1__PP751_gp091__00091
Identity
- Accession:
- NC_070857 ↗
- Kingdom:
- phage
Quality
72.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Xoxocotlavirus›
Rhizobium_phage_RHph_X2_28B
TaxID: 2836086
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6x6uA01 | 3.60.9.10 | Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain | 0.67 | 39.0 | 2.52e-01 | 86.0% | 13.3% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.65 | 47.0 | 3.43e-01 | 78.0% | 28.9% |
| 1z1nX02 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.65 | 44.0 | 3.37e-01 | 70.0% | 29.9% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 51.0 | 3.19e-01 | 84.0% | 20.2% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 43.0 | 2.91e-01 | 76.0% | 22.9% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.56 | 43.0 | 4.15e-01 | 84.0% | 92.9% |
| 3k17A01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 42.0 | 2.74e-01 | 82.0% | 58.1% |
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.54 | 37.0 | 3.25e-01 | 74.0% | 64.2% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.51 | 37.0 | 3.53e-01 | 82.0% | 88.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3614864 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.83 | 49.0 | 3.23e-01 | 88.0% | 16.4% |
| 3537307 | 377.1.1.34 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 | 0.75 | 55.0 | 4.29e-01 | 80.0% | 43.6% |
| 3693975 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.72 | 43.0 | 3.14e-01 | 96.0% | 23.1% |
| 3377044 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.72 | 57.0 | 4.23e-01 | 92.0% | 36.5% |
| 3790485 | 2.1.1.224 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 | 0.65 | 41.0 | 2.82e-01 | 90.0% | 17.7% |
| 5018523 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.62 | 52.0 | 4.69e-01 | 94.0% | 68.6% |
| 5051200 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 36.0 | 3.16e-01 | 74.0% | 48.8% |
| 4950394 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.52 | 34.0 | 2.76e-01 | 90.0% | 32.4% |
| 3687510 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 33.0 | 2.97e-01 | 70.0% | 60.0% |