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NC_070859.1__YP_010658645.1__PP753_gp78__00041
Bact-VirNC_070859.1__YP_010658645.1__PP753_gp78__00041
Identity
- Accession:
- NC_070859 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Gonggongvirus›
Dinoroseobacter_phage_vB_DshP-R7L
TaxID: 2873349
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-73
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5yxgB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 62.0 | 4.77e-01 | 100.0% | 56.5% |
| 2p39A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.66 | 56.0 | 4.26e-01 | 100.0% | 88.0% |
| 1djxA02 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.63 | 46.0 | 2.93e-01 | 80.0% | 80.6% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.61 | 40.0 | 3.54e-01 | 83.6% | 45.8% |
| 2nutB04 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.56 | 46.0 | 3.16e-01 | 100.0% | 76.3% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.54 | 44.0 | 4.21e-01 | 90.9% | 75.8% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.53 | 46.0 | 4.12e-01 | 100.0% | 89.7% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.52 | 43.0 | 4.17e-01 | 90.9% | 85.2% |
| 1t6eX01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 42.0 | 3.06e-01 | 100.0% | 98.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3350469 | 604.1.1.164 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM62_C | 0.51 | 40.0 | 2.68e-01 | 89.1% | 66.0% |
| 3374859 | 604.6.1.47 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › TMEM62_C | 0.51 | 40.0 | 2.67e-01 | 89.1% | 64.6% |
| 5041412 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.50 | 41.0 | 3.71e-01 | 100.0% | 80.0% |