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NC_070860.1__YP_010658706.1__PP754_gp019__00019

Bact-Vir

NC_070860.1__YP_010658706.1__PP754_gp019__00019

Identity

Accession:
NC_070860 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Cbunavirus› Pectobacterium_phage_Possum

TaxID: 2686301

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-91
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w8oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 4.17e-01 100.0% 67.6%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.57 50.0 4.68e-01 100.0% 84.3%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.57 36.0 3.72e-01 100.0% 68.9%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.56 42.0 3.85e-01 100.0% 59.5%
1sh8B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 3.25e-01 100.0% 42.3%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 41.0 3.60e-01 82.7% 81.7%
3b42A00 3.30.450.290 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 40.0 3.50e-01 84.0% 73.8%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 40.0 2.99e-01 85.2% 98.2%
2hr0B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.87e-01 98.8% 68.8%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.51 30.0 3.34e-01 100.0% 76.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3426700 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 5.56e-01 100.0% 96.2%
2774111 12.6.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.60 36.0 3.73e-01 100.0% 62.8%
3978756 3197.1.1.1 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.58 42.0 3.75e-01 77.8% 90.8%
4350122 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.58 44.0 4.13e-01 100.0% 65.7%
3615747 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.23e-01 81.5% 40.5%
3713754 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 3.29e-01 96.3% 42.3%
3925232 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 35.0 2.67e-01 85.2% 26.3%
5070705 11.1.1.1402 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_recep 0.56 48.0 4.28e-01 98.8% 79.2%
4992937 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.56 46.0 3.08e-01 92.6% 27.2%
3284835 11.4.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 0.54 46.0 4.05e-01 100.0% 72.3%
5011662 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 47.0 3.88e-01 100.0% 82.7%
5067974 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.23e-01 100.0% 80.9%
3256728 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 44.0 3.70e-01 100.0% 53.1%
3930463 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 41.0 3.85e-01 86.4% 100.0%
None — 0.52 38.0 3.36e-01 100.0% 48.9%
3247872 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.52 43.0 3.88e-01 100.0% 64.0%
4951996 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.52 34.0 2.71e-01 82.7% 34.8%
3257266 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 36.0 3.23e-01 95.1% 48.8%
3982237 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 41.0 4.05e-01 96.3% 87.1%
4562380 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 41.0 3.38e-01 93.8% 53.9%
3514856 1181.1.1.0 ↗ 0.50 32.0 3.35e-01 84.0% 69.3%
4992459 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.50 36.0 3.85e-01 92.6% 87.1%
3518960 300.1.1.2 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.50 42.0 3.35e-01 95.1% 73.1%
3589620 4312.1.1.11 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin 0.50 40.0 3.91e-01 93.8% 77.8%
3962989 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.50 33.0 3.14e-01 82.7% 55.0%