←Back to structures
NC_070861.1__YP_010658802.1__PP755_gp13__00013
Bact-VirNC_070861.1__YP_010658802.1__PP755_gp13__00013
Identity
- Accession:
- NC_070861 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Taxonomy
TaxID: 2863195
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-92
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.81 | 53.0 | 5.58e-01 | 78.0% | 73.5% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 51.0 | 4.61e-01 | 79.1% | 56.3% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.71 | 53.0 | 4.88e-01 | 78.0% | 67.3% |
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 50.0 | 4.41e-01 | 74.7% | 76.9% |
| 6j7xA01 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.69 | 50.0 | 3.54e-01 | 75.8% | 26.5% |
| 2m6bA00 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.68 | 47.0 | 3.95e-01 | 70.3% | 52.0% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 53.0 | 5.75e-01 | 85.7% | 98.7% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 51.0 | 5.66e-01 | 83.5% | 97.3% |
| 3gz1A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 44.0 | 3.80e-01 | 81.3% | 42.4% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.67 | 54.0 | 4.20e-01 | 85.7% | 72.3% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 44.0 | 4.62e-01 | 70.3% | 74.7% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.66 | 49.0 | 4.49e-01 | 78.0% | 68.1% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.66 | 47.0 | 4.17e-01 | 74.7% | 60.2% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.66 | 49.0 | 4.69e-01 | 85.7% | 67.6% |
| 2a9uA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.64 | 54.0 | 4.83e-01 | 90.1% | 65.1% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.64 | 46.0 | 4.29e-01 | 74.7% | 72.7% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 54.0 | 4.48e-01 | 92.3% | 59.1% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 46.0 | 4.10e-01 | 78.0% | 63.8% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 46.0 | 4.48e-01 | 79.1% | 71.0% |
| 3e6sA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 46.0 | 3.81e-01 | 78.0% | 83.0% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.62 | 44.0 | 4.04e-01 | 90.1% | 57.8% |
| 4cmyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 45.0 | 3.71e-01 | 78.0% | 80.4% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 52.0 | 4.36e-01 | 96.7% | 66.2% |
| 1vjxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 47.0 | 3.99e-01 | 85.7% | 94.0% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 44.0 | 3.63e-01 | 78.0% | 80.4% |
| 8d0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 49.0 | 3.23e-01 | 92.3% | 23.5% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.58 | 51.0 | 4.38e-01 | 100.0% | 61.8% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 47.0 | 4.26e-01 | 93.4% | 87.9% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.57 | 43.0 | 3.79e-01 | 79.1% | 63.6% |
| 1jgcA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 46.0 | 3.86e-01 | 89.0% | 85.6% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.56 | 47.0 | 4.68e-01 | 95.6% | 93.6% |
| 1e3mB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.56 | 46.0 | 3.94e-01 | 98.9% | 55.3% |
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.56 | 40.0 | 4.24e-01 | 82.4% | 84.1% |
| 3unoE00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 44.0 | 3.62e-01 | 85.7% | 82.0% |
| 3rkoF01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.55 | 41.0 | 3.45e-01 | 85.7% | 45.0% |
| 1ysyA00 | 1.10.8.370 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase | 0.55 | 35.0 | 3.63e-01 | 89.0% | 68.2% |
| 5u1aL00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 48.0 | 3.84e-01 | 93.4% | 97.0% |
| 1gs0A01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.54 | 37.0 | 3.33e-01 | 71.4% | 55.8% |
| 1fbwA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 46.0 | 3.06e-01 | 100.0% | 85.4% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.52 | 45.0 | 3.98e-01 | 91.2% | 65.1% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.50 | 30.0 | 3.15e-01 | 70.3% | 63.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4200527 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 50.0 | 4.24e-01 | 80.2% | 41.4% |
| 4028540 | 3543.1.1.3 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › YrhK | 0.77 | 52.0 | 4.06e-01 | 70.3% | 76.2% |
| 3695480 | 109.4.1.1666 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 | 0.73 | 54.0 | 4.08e-01 | 80.2% | 34.1% |
| 3740842 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.71 | 54.0 | 5.22e-01 | 79.1% | 80.0% |
| 5005533 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.70 | 53.0 | 4.43e-01 | 79.1% | 69.3% |
| 4016538 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 51.0 | 4.71e-01 | 81.3% | 60.5% |
| 3628277 | 604.1.1.173 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mitofilin | 0.69 | 50.0 | 4.29e-01 | 74.7% | 75.7% |
| 5065054 | 603.1.1.238 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Cpn60_TCP1 | 0.68 | 46.0 | 4.59e-01 | 71.4% | 67.4% |
| 4469856 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.68 | 50.0 | 4.45e-01 | 85.7% | 56.0% |
| 143387 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.66 | 47.0 | 4.40e-01 | 79.1% | 60.2% |
| 3172018 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.64 | 46.0 | 4.54e-01 | 75.8% | 81.1% |
| 3718902 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 49.0 | 3.50e-01 | 85.7% | 77.9% |
| 3255663 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.63 | 46.0 | 4.41e-01 | 76.9% | 66.7% |
| 3659069 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.63 | 45.0 | 4.17e-01 | 76.9% | 98.3% |
| 5004498 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.62 | 44.0 | 4.31e-01 | 100.0% | 68.0% |
| 3667270 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.60 | 45.0 | 3.65e-01 | 80.2% | 50.0% |
| 5049865 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.59 | 49.0 | 4.12e-01 | 86.8% | 62.1% |
| 5083727 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.59 | 43.0 | 3.39e-01 | 78.0% | 43.5% |
| 4952830 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.58 | 44.0 | 3.55e-01 | 81.3% | 53.3% |
| 5009776 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.58 | 40.0 | 3.87e-01 | 89.0% | 61.9% |
| 4975476 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 40.0 | 3.43e-01 | 72.5% | 93.3% |
| 3584334 | 604.12.1.56 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ASTER | 0.56 | 45.0 | 4.60e-01 | 96.7% | 90.0% |
| 3744797 | 6155.1.1.6 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2921 | 0.55 | 44.0 | 3.33e-01 | 87.9% | 76.9% |
| 5028018 | 5045.1.1.0 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A | 0.54 | 47.0 | 3.25e-01 | 98.9% | 28.7% |
| 4941521 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.54 | 50.0 | 4.92e-01 | 97.8% | 93.7% |
| 5031071 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.54 | 50.0 | 4.15e-01 | 98.9% | 77.3% |
| 5082813 | 3813.1.1.2 ↗ | alpha bundles › DUF416 › DUF416 › DUF416 › Imm5_like | 0.54 | 44.0 | 3.84e-01 | 91.2% | 80.0% |
| 3985675 | 3579.1.1.30 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Imp-YgjV | 0.53 | 50.0 | 4.22e-01 | 100.0% | 82.1% |
| 4193980 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.52 | 40.0 | 3.49e-01 | 81.3% | 71.9% |
| 4966685 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.52 | 48.0 | 3.82e-01 | 100.0% | 75.4% |