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NC_070861.1__YP_010658847.1__PP755_gp58__00058

Bact-Vir

NC_070861.1__YP_010658847.1__PP755_gp58__00058

Identity

Accession:
NC_070861 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Cbunavirus› Kosakonia_phage_Kc283

TaxID: 2863195

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-33_70-111_135-145
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3790359 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 35.0 3.30e-01 72.5% 69.4%
D2 medium residues 34-69_112-134_146-236
PDB
Domain cluster: rep: IMGVR_UViG_3300020139_000054-3300020139-Ga0197143_10042646__D29-208
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.69 64.0 5.59e-01 100.0% 90.4%
3k93A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.66 61.0 5.32e-01 100.0% 91.0%
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.64 60.0 5.48e-01 100.0% 85.1%
6ll8A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.57 31.0 3.39e-01 86.7% 62.5%
1vkwA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 27.0 2.96e-01 85.3% 60.3%
2y27A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 26.0 3.07e-01 82.7% 68.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000157 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.73 67.0 5.99e-01 100.0% 72.5%
3950933 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.66 62.0 5.04e-01 100.0% 83.4%
4938117 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.66 61.0 4.86e-01 100.0% 87.2%
4559667 2008.1.1.50 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ 0.66 61.0 4.92e-01 100.0% 78.9%
5080163 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.65 61.0 4.99e-01 100.0% 78.4%
4930402 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 51.0 4.88e-01 100.0% 89.7%
3515746 2008.1.1.91 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C 0.51 35.0 3.49e-01 70.0% 77.5%
D3 medium residues 250-323
PDB
Domain cluster: rep: IMGVR_UViG_3300021500_000017-3300021500-Ga0190347_100080321__D210-282
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.63 54.0 4.24e-01 100.0% 66.3%
3vn5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 45.0 3.43e-01 82.4% 79.6%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.59 48.0 4.28e-01 91.9% 62.5%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.57 48.0 3.70e-01 100.0% 56.0%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.56 45.0 3.24e-01 91.9% 61.9%
2vr5B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 47.0 3.78e-01 100.0% 58.4%
3kg5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.81e-01 100.0% 64.1%
2qh7B01 3.40.5.90 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › CDGSH iron-sulfur domain, mitoNEET-type 0.52 31.0 3.63e-01 90.5% 93.6%
3kq4B03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.52 37.0 3.24e-01 75.7% 72.3%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 3.35e-01 95.9% 73.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.61 42.0 4.58e-01 91.9% 90.0%
3249139 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.60 41.0 3.56e-01 71.6% 95.0%
3405569 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 39.0 3.52e-01 78.4% 49.1%
4274062 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.56 45.0 3.18e-01 91.9% 63.6%
4650634 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.56 45.0 3.18e-01 91.9% 62.0%
4964337 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.55 37.0 4.12e-01 87.8% 96.4%
80936 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.53 44.0 3.38e-01 91.9% 79.4%
3694112 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.63e-01 100.0% 54.2%
3870120 1181.1.1.0 ↗ 0.51 36.0 3.61e-01 95.9% 73.3%
3766042 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.50 42.0 3.81e-01 100.0% 70.9%
4024013 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.50 37.0 2.68e-01 79.7% 66.8%