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NC_070862.1__YP_010658905.1__PP756_gp25__00025

Bact-Vir

NC_070862.1__YP_010658905.1__PP756_gp25__00025

Identity

Accession:
NC_070862 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Litunavirus› Pseudomonas_phage_VB_PaeP_VL1

TaxID: 2894395

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
Domain cluster: rep: BML_coassembly_scaffold_37_prodigal-single.1__X__X__00015__D2-73
D2 high residues 156-218
PDB
Domain cluster: rep: NC_049505.1__YP_009888547.1__HYQ35_gp021__00021__D163-229
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 62.0 6.09e-01 96.8% 76.5%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.80 41.0 3.32e-01 74.6% 28.3%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.72 39.0 3.61e-01 76.2% 41.8%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 40.0 3.82e-01 76.2% 46.6%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 40.0 4.73e-01 85.7% 97.4%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 41.0 3.02e-01 74.6% 88.3%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 38.0 4.29e-01 71.4% 91.5%
3ckjA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 46.0 3.01e-01 93.7% 74.7%
2k2eA01 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.56 45.0 3.65e-01 93.7% 85.3%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.66e-01 95.2% 88.3%
4c2mA04 3.30.1490.180 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii 0.54 38.0 3.62e-01 93.7% 62.3%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 40.0 4.33e-01 90.5% 98.1%
2di3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 4.05e-01 96.8% 76.0%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.35e-01 90.5% 47.7%
3ewiB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 37.0 2.93e-01 81.0% 91.8%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.68e-01 93.7% 81.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291061 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 39.0 3.19e-01 73.0% 27.8%
4034325 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 41.0 3.23e-01 76.2% 27.2%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.73 54.0 5.85e-01 95.2% 100.0%
3285380 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 40.0 3.19e-01 76.2% 27.2%
4061721 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 39.0 3.04e-01 74.6% 25.4%
3291393 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 40.0 3.23e-01 76.2% 29.6%
4564454 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 39.0 3.27e-01 74.6% 31.4%
4672676 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 40.0 3.02e-01 76.2% 24.3%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.70 51.0 5.58e-01 92.1% 100.0%
2967124 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.69 39.0 3.84e-01 76.2% 50.7%
4198222 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.67 39.0 3.75e-01 77.8% 50.0%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.67 40.0 3.25e-01 79.4% 31.3%
5077847 7538.1.1.1 ↗ a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › DUF498 0.62 50.0 4.14e-01 95.2% 84.8%
4943773 297.1.1.2 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC 0.56 45.0 3.21e-01 93.7% 82.3%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.55 41.0 4.49e-01 77.8% 98.0%
2323730 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.53 44.0 3.64e-01 95.2% 91.1%
3273420 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 38.0 2.47e-01 81.0% 71.9%
3701353 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.20e-01 93.7% 81.3%
3223489 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.52 40.0 3.30e-01 90.5% 49.2%
3482975 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.51 39.0 3.26e-01 88.9% 50.4%
5037842 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.50 38.0 2.68e-01 90.5% 90.2%
5049764 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 39.0 3.35e-01 90.5% 57.4%
3593170 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 4.08e-01 96.8% 92.0%