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NC_070864.1__YP_010659064.1__PP758_gp02__00001
Bact-VirNC_070864.1__YP_010659064.1__PP758_gp02__00001
Identity
- Accession:
- NC_070864 ↗
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Taxonomy
TaxID: 2713224
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-64
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 48.0 | 3.07e-01 | 82.0% | 85.2% |
| 1o4xA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 42.0 | 4.17e-01 | 72.0% | 66.7% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.26e-01 | 76.0% | 81.8% |
| 1jswB03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.56 | 40.0 | 4.02e-01 | 80.0% | 72.0% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.56 | 45.0 | 3.81e-01 | 98.0% | 93.8% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.56 | 43.0 | 3.68e-01 | 92.0% | 72.2% |
| 1ed1A00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.54 | 43.0 | 3.42e-01 | 94.0% | 78.9% |
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.54 | 40.0 | 3.35e-01 | 88.0% | 93.1% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.51 | 38.0 | 3.00e-01 | 92.0% | 94.9% |
| 1x6hA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 31.0 | 2.64e-01 | 86.0% | 32.6% |
| 1wjpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 32.0 | 3.38e-01 | 100.0% | 96.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578228 | 103.1.1.26 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › MELK_UBA | 0.59 | 39.0 | 3.38e-01 | 74.0% | 41.2% |
| 4991473 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.56 | 38.0 | 2.45e-01 | 78.0% | 14.5% |
| 4016206 | 5050.1.1.55 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, MFS_1 | 0.55 | 45.0 | 2.64e-01 | 100.0% | 60.8% |
| 4003733 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.54 | 38.0 | 2.40e-01 | 78.0% | 53.9% |
| 4019552 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.53 | 37.0 | 2.32e-01 | 76.0% | 23.4% |
| 4986404 | 4008.1.1.0 ↗ | 0.52 | 38.0 | 3.85e-01 | 82.0% | 78.0% | |
| 3618097 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.52 | 45.0 | 4.27e-01 | 100.0% | 83.3% |
| 8335 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 32.0 | 3.33e-01 | 100.0% | 71.4% |